Hb_000788_090

Information

Type transcription factor
Description TF Family: FAR1
Location Contig788: 83980-89707
Sequence    

Annotation

kegg
ID tcc:TCM_041141
description FAR1-related sequence 11
nr
ID XP_006588529.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
swissprot
ID Q9SY66
description Protein FAR1-RELATED SEQUENCE 11 OS=Arabidopsis thaliana GN=FRS11 PE=2 SV=1
trembl
ID A0A067LDA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00282 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein far1-related sequence 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58180: 83637-84359 , PASA_asmbl_58181: 84404-84777 , PASA_asmbl_58182: 85698-87105 , PASA_asmbl_58183: 87840-89710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_090 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2 [Glycine max]
2 Hb_000608_370 0.0620371242 - - acyl-carrier-protein [Triadica sebifera]
3 Hb_007416_030 0.0659694856 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
4 Hb_001047_230 0.0749353976 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_003656_070 0.0799115517 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
6 Hb_002110_120 0.0808351465 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
7 Hb_008173_090 0.0836096375 - - glutathione peroxidase, putative [Ricinus communis]
8 Hb_000334_210 0.0868392126 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
9 Hb_029866_060 0.0869985074 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
10 Hb_001269_630 0.0870611705 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
11 Hb_000146_020 0.0880940883 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_153112_020 0.0887910704 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
13 Hb_000134_330 0.089442489 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
14 Hb_004586_320 0.0897817609 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
15 Hb_002454_030 0.0899890752 - - PREDICTED: mitochondrial substrate carrier family protein B [Jatropha curcas]
16 Hb_129204_030 0.0903007354 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
17 Hb_012753_160 0.0903964181 - - ara4-interacting protein, putative [Ricinus communis]
18 Hb_000258_170 0.0914999222 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
19 Hb_021409_030 0.0915229007 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
20 Hb_003018_200 0.0923985507 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000788_090 Hb_000788_090 Hb_000608_370 Hb_000608_370 Hb_000788_090--Hb_000608_370 Hb_007416_030 Hb_007416_030 Hb_000788_090--Hb_007416_030 Hb_001047_230 Hb_001047_230 Hb_000788_090--Hb_001047_230 Hb_003656_070 Hb_003656_070 Hb_000788_090--Hb_003656_070 Hb_002110_120 Hb_002110_120 Hb_000788_090--Hb_002110_120 Hb_008173_090 Hb_008173_090 Hb_000788_090--Hb_008173_090 Hb_129204_030 Hb_129204_030 Hb_000608_370--Hb_129204_030 Hb_000608_370--Hb_007416_030 Hb_000608_370--Hb_001047_230 Hb_000258_170 Hb_000258_170 Hb_000608_370--Hb_000258_170 Hb_002454_030 Hb_002454_030 Hb_000608_370--Hb_002454_030 Hb_002686_020 Hb_002686_020 Hb_007416_030--Hb_002686_020 Hb_002864_050 Hb_002864_050 Hb_007416_030--Hb_002864_050 Hb_007416_030--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_007416_030--Hb_003683_110 Hb_001047_230--Hb_003656_070 Hb_000920_110 Hb_000920_110 Hb_001047_230--Hb_000920_110 Hb_001047_230--Hb_129204_030 Hb_000334_210 Hb_000334_210 Hb_001047_230--Hb_000334_210 Hb_003656_070--Hb_008173_090 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320 Hb_007317_150 Hb_007317_150 Hb_002110_120--Hb_007317_150 Hb_001269_630 Hb_001269_630 Hb_002110_120--Hb_001269_630 Hb_000020_060 Hb_000020_060 Hb_002110_120--Hb_000020_060 Hb_001235_190 Hb_001235_190 Hb_002110_120--Hb_001235_190 Hb_002110_120--Hb_003656_070 Hb_002110_120--Hb_008173_090 Hb_008173_090--Hb_001235_190 Hb_000200_100 Hb_000200_100 Hb_008173_090--Hb_000200_100 Hb_008173_090--Hb_000574_480 Hb_000970_010 Hb_000970_010 Hb_008173_090--Hb_000970_010 Hb_002182_060 Hb_002182_060 Hb_008173_090--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6561 7.44553 7.67844 4.82404 14.9152 9.67821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.5541 30.4697 20.332 6.12259 6.1679

CAGE analysis