Hb_000788_100

Information

Type -
Description -
Location Contig788: 90924-92471
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24730g
description POPTRDRAFT_561681; hypothetical protein
nr
ID XP_012066719.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
swissprot
ID Q9FJY7
description Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
trembl
ID A0A067L218
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00279 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_100 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Jatropha curcas]
2 Hb_011316_050 0.0836354011 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
3 Hb_000904_070 0.0878442622 - - PREDICTED: acetylglutamate kinase, chloroplastic [Jatropha curcas]
4 Hb_012762_050 0.0902420069 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
5 Hb_005332_070 0.0916237757 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
6 Hb_135545_010 0.0926992936 - - calmodulin binding protein, putative [Ricinus communis]
7 Hb_003992_240 0.0935211706 - - -
8 Hb_000988_080 0.0941224362 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_001301_160 0.0952458254 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
10 Hb_003001_140 0.0954133112 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
11 Hb_001242_060 0.0973000359 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
12 Hb_000056_200 0.0983288992 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
13 Hb_001488_330 0.1010914933 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
14 Hb_011609_100 0.1013140196 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
15 Hb_001226_160 0.1013997021 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
16 Hb_002256_030 0.1020103271 - - conserved hypothetical protein [Ricinus communis]
17 Hb_011571_020 0.1036184412 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
18 Hb_000089_220 0.1056325887 - - PREDICTED: protein FAM133-like [Populus euphratica]
19 Hb_006185_050 0.1058217119 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
20 Hb_002044_080 0.1058241716 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_100 Hb_000788_100 Hb_011316_050 Hb_011316_050 Hb_000788_100--Hb_011316_050 Hb_000904_070 Hb_000904_070 Hb_000788_100--Hb_000904_070 Hb_012762_050 Hb_012762_050 Hb_000788_100--Hb_012762_050 Hb_005332_070 Hb_005332_070 Hb_000788_100--Hb_005332_070 Hb_135545_010 Hb_135545_010 Hb_000788_100--Hb_135545_010 Hb_003992_240 Hb_003992_240 Hb_000788_100--Hb_003992_240 Hb_000453_170 Hb_000453_170 Hb_011316_050--Hb_000453_170 Hb_006316_040 Hb_006316_040 Hb_011316_050--Hb_006316_040 Hb_002496_030 Hb_002496_030 Hb_011316_050--Hb_002496_030 Hb_000827_070 Hb_000827_070 Hb_011316_050--Hb_000827_070 Hb_001242_060 Hb_001242_060 Hb_011316_050--Hb_001242_060 Hb_004684_010 Hb_004684_010 Hb_011316_050--Hb_004684_010 Hb_000056_210 Hb_000056_210 Hb_000904_070--Hb_000056_210 Hb_002701_020 Hb_002701_020 Hb_000904_070--Hb_002701_020 Hb_005694_110 Hb_005694_110 Hb_000904_070--Hb_005694_110 Hb_000465_460 Hb_000465_460 Hb_000904_070--Hb_000465_460 Hb_003952_090 Hb_003952_090 Hb_000904_070--Hb_003952_090 Hb_012762_050--Hb_135545_010 Hb_000473_040 Hb_000473_040 Hb_012762_050--Hb_000473_040 Hb_000221_220 Hb_000221_220 Hb_012762_050--Hb_000221_220 Hb_001512_070 Hb_001512_070 Hb_012762_050--Hb_001512_070 Hb_002007_060 Hb_002007_060 Hb_012762_050--Hb_002007_060 Hb_011571_020 Hb_011571_020 Hb_012762_050--Hb_011571_020 Hb_005332_070--Hb_011571_020 Hb_005332_070--Hb_000473_040 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_011360_140 Hb_011360_140 Hb_005332_070--Hb_011360_140 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140 Hb_135545_010--Hb_000473_040 Hb_001301_160 Hb_001301_160 Hb_135545_010--Hb_001301_160 Hb_000139_350 Hb_000139_350 Hb_135545_010--Hb_000139_350 Hb_135545_010--Hb_002007_060 Hb_135545_010--Hb_011571_020 Hb_011609_100 Hb_011609_100 Hb_003992_240--Hb_011609_100 Hb_114893_030 Hb_114893_030 Hb_003992_240--Hb_114893_030 Hb_000012_220 Hb_000012_220 Hb_003992_240--Hb_000012_220 Hb_015279_010 Hb_015279_010 Hb_003992_240--Hb_015279_010 Hb_022425_040 Hb_022425_040 Hb_003992_240--Hb_022425_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9738 2.25926 1.35558 1.04458 2.30744 3.32339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.65657 4.45487 2.85267 0.832 1.24094

CAGE analysis