Hb_000788_120

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig788: 117485-120205
Sequence    

Annotation

kegg
ID egr:104452517
description disease resistance protein RPS2-like
nr
ID XP_010065276.1
description PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID A0A059B985
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00249 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance protein rps2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000788_120 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
2 Hb_003057_130 0.0945139266 - - -
3 Hb_012305_060 0.1119117654 - - protein translocase, putative [Ricinus communis]
4 Hb_000175_040 0.127974399 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
5 Hb_027472_090 0.136419902 - - -
6 Hb_025246_010 0.1381609812 - - -
7 Hb_001999_120 0.147602898 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
8 Hb_008408_030 0.1479802386 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 2 [Jatropha curcas]
9 Hb_000521_150 0.1483302829 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
10 Hb_000284_010 0.1483308557 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]
11 Hb_000005_030 0.1488747538 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
12 Hb_007625_020 0.1497650867 - - PREDICTED: casein kinase II subunit alpha-like [Sesamum indicum]
13 Hb_004545_160 0.1503924235 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_000062_580 0.1515672225 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000061_330 0.1529536575 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
16 Hb_000526_020 0.1550785173 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_002471_170 0.1555250676 - - -
18 Hb_007747_130 0.156241263 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
19 Hb_150299_030 0.1573504619 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003226_150 0.1577298465 - - PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Jatropha curcas]

Gene co-expression network

sample Hb_000788_120 Hb_000788_120 Hb_003057_130 Hb_003057_130 Hb_000788_120--Hb_003057_130 Hb_012305_060 Hb_012305_060 Hb_000788_120--Hb_012305_060 Hb_000175_040 Hb_000175_040 Hb_000788_120--Hb_000175_040 Hb_027472_090 Hb_027472_090 Hb_000788_120--Hb_027472_090 Hb_025246_010 Hb_025246_010 Hb_000788_120--Hb_025246_010 Hb_001999_120 Hb_001999_120 Hb_000788_120--Hb_001999_120 Hb_003057_130--Hb_025246_010 Hb_003057_130--Hb_000175_040 Hb_003057_130--Hb_012305_060 Hb_000284_010 Hb_000284_010 Hb_003057_130--Hb_000284_010 Hb_000005_030 Hb_000005_030 Hb_003057_130--Hb_000005_030 Hb_004545_160 Hb_004545_160 Hb_012305_060--Hb_004545_160 Hb_000193_230 Hb_000193_230 Hb_012305_060--Hb_000193_230 Hb_007625_020 Hb_007625_020 Hb_012305_060--Hb_007625_020 Hb_000078_030 Hb_000078_030 Hb_012305_060--Hb_000078_030 Hb_012305_060--Hb_000284_010 Hb_007451_030 Hb_007451_030 Hb_012305_060--Hb_007451_030 Hb_000175_040--Hb_025246_010 Hb_000699_110 Hb_000699_110 Hb_000175_040--Hb_000699_110 Hb_000175_040--Hb_007625_020 Hb_004502_080 Hb_004502_080 Hb_000175_040--Hb_004502_080 Hb_027472_090--Hb_012305_060 Hb_002471_170 Hb_002471_170 Hb_027472_090--Hb_002471_170 Hb_027472_090--Hb_004545_160 Hb_003185_020 Hb_003185_020 Hb_027472_090--Hb_003185_020 Hb_027472_090--Hb_007625_020 Hb_000008_320 Hb_000008_320 Hb_027472_090--Hb_000008_320 Hb_003057_050 Hb_003057_050 Hb_025246_010--Hb_003057_050 Hb_036369_010 Hb_036369_010 Hb_025246_010--Hb_036369_010 Hb_001248_020 Hb_001248_020 Hb_025246_010--Hb_001248_020 Hb_025246_010--Hb_000699_110 Hb_000984_190 Hb_000984_190 Hb_025246_010--Hb_000984_190 Hb_003038_180 Hb_003038_180 Hb_001999_120--Hb_003038_180 Hb_001722_040 Hb_001722_040 Hb_001999_120--Hb_001722_040 Hb_000062_580 Hb_000062_580 Hb_001999_120--Hb_000062_580 Hb_025087_010 Hb_025087_010 Hb_001999_120--Hb_025087_010 Hb_005618_040 Hb_005618_040 Hb_001999_120--Hb_005618_040 Hb_000926_290 Hb_000926_290 Hb_001999_120--Hb_000926_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.005 17.1983 10.6419 15.3202 36.8822 166.924
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
234.807 184.568 59.8594 13.065 8.37463

CAGE analysis