Hb_000789_060

Information

Type -
Description -
Location Contig789: 18977-22855
Sequence    

Annotation

kegg
ID tcc:TCM_037760
description MAP kinase kinase 6 isoform 1
nr
ID XP_012076848.1
description PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
swissprot
ID Q9FJV0
description Mitogen-activated protein kinase kinase 6 OS=Arabidopsis thaliana GN=MKK6 PE=1 SV=1
trembl
ID A0A067KPQ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07355 PE=4 SV=1
Gene Ontology
ID GO:0005622
description mitogen-activated protein kinase kinase 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58204: 19047-22850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_060 0.0 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]
2 Hb_000302_270 0.0701165272 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
3 Hb_005539_220 0.078890153 - - spermidine synthase 1, putative [Ricinus communis]
4 Hb_008246_040 0.082375625 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
5 Hb_000403_050 0.0843413068 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
6 Hb_002671_140 0.0845422312 - - calcium-dependent protein kinase [Hevea brasiliensis]
7 Hb_000521_320 0.0865110732 - - hypothetical protein POPTR_0001s23520g [Populus trichocarpa]
8 Hb_000915_020 0.0888418856 - - unnamed protein product [Vitis vinifera]
9 Hb_036790_100 0.0894548625 - - PREDICTED: uncharacterized protein LOC105645120 [Jatropha curcas]
10 Hb_000185_070 0.0926007912 - - conserved hypothetical protein [Ricinus communis]
11 Hb_017224_030 0.0937016339 - - PREDICTED: A-agglutinin anchorage subunit [Jatropha curcas]
12 Hb_007075_040 0.0940683422 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
13 Hb_011883_010 0.0970843109 - - PREDICTED: RNA-binding protein 7 isoform X1 [Jatropha curcas]
14 Hb_000308_030 0.0974329308 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
15 Hb_004678_040 0.0991613295 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
16 Hb_000010_400 0.1008983305 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
17 Hb_001728_050 0.1009055024 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
18 Hb_005653_090 0.1013455637 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
19 Hb_000020_190 0.1015286647 - - hypothetical protein RCOM_0452240 [Ricinus communis]
20 Hb_000416_040 0.1023542316 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000789_060 Hb_000789_060 Hb_000302_270 Hb_000302_270 Hb_000789_060--Hb_000302_270 Hb_005539_220 Hb_005539_220 Hb_000789_060--Hb_005539_220 Hb_008246_040 Hb_008246_040 Hb_000789_060--Hb_008246_040 Hb_000403_050 Hb_000403_050 Hb_000789_060--Hb_000403_050 Hb_002671_140 Hb_002671_140 Hb_000789_060--Hb_002671_140 Hb_000521_320 Hb_000521_320 Hb_000789_060--Hb_000521_320 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000771_120 Hb_000771_120 Hb_000302_270--Hb_000771_120 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_007075_040 Hb_007075_040 Hb_005539_220--Hb_007075_040 Hb_000020_190 Hb_000020_190 Hb_005539_220--Hb_000020_190 Hb_000230_200 Hb_000230_200 Hb_005539_220--Hb_000230_200 Hb_000230_560 Hb_000230_560 Hb_005539_220--Hb_000230_560 Hb_005539_220--Hb_008246_040 Hb_000915_020 Hb_000915_020 Hb_008246_040--Hb_000915_020 Hb_000442_150 Hb_000442_150 Hb_008246_040--Hb_000442_150 Hb_008246_040--Hb_000020_190 Hb_014497_050 Hb_014497_050 Hb_008246_040--Hb_014497_050 Hb_008246_040--Hb_002671_140 Hb_008246_040--Hb_000185_070 Hb_003125_120 Hb_003125_120 Hb_000403_050--Hb_003125_120 Hb_036790_100 Hb_036790_100 Hb_000403_050--Hb_036790_100 Hb_000334_280 Hb_000334_280 Hb_000403_050--Hb_000334_280 Hb_156973_010 Hb_156973_010 Hb_000403_050--Hb_156973_010 Hb_001163_050 Hb_001163_050 Hb_000403_050--Hb_001163_050 Hb_005271_220 Hb_005271_220 Hb_000403_050--Hb_005271_220 Hb_000562_090 Hb_000562_090 Hb_002671_140--Hb_000562_090 Hb_003609_030 Hb_003609_030 Hb_002671_140--Hb_003609_030 Hb_002671_140--Hb_000442_150 Hb_000661_290 Hb_000661_290 Hb_002671_140--Hb_000661_290 Hb_057878_010 Hb_057878_010 Hb_002671_140--Hb_057878_010 Hb_000521_320--Hb_000010_400 Hb_000521_320--Hb_004678_040 Hb_002950_100 Hb_002950_100 Hb_000521_320--Hb_002950_100 Hb_011995_010 Hb_011995_010 Hb_000521_320--Hb_011995_010 Hb_025645_010 Hb_025645_010 Hb_000521_320--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.2162 25.7935 22.6353 15.9516 12.5551 28.5955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9395 25.0401 23.4826 14.194 13.9865

CAGE analysis