Hb_000789_100

Information

Type -
Description -
Location Contig789: 45842-49495
Sequence    

Annotation

kegg
ID rcu:RCOM_1048940
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012076842.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067KPQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07350 PE=3 SV=1
Gene Ontology
ID GO:0009505
description glucan endo- -beta-glucosidase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_100 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
2 Hb_000297_110 0.1125055389 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
3 Hb_010968_010 0.1218229818 - - Golgi snare 12 isoform 1 [Theobroma cacao]
4 Hb_000920_280 0.123515584 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
5 Hb_001484_060 0.1451752537 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
6 Hb_000676_050 0.1459568351 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
7 Hb_000482_110 0.1515088083 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_152453_010 0.1524575045 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
9 Hb_001040_040 0.1525002655 - - Uncharacterized protein TCM_029905 [Theobroma cacao]
10 Hb_002267_090 0.1531509208 - - Cytochrome c oxidase assembly protein COX19, putative [Ricinus communis]
11 Hb_001279_330 0.1555704613 - - Protein bem46, putative [Ricinus communis]
12 Hb_000933_150 0.1556126288 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
13 Hb_004447_030 0.1562454618 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
14 Hb_024505_020 0.1571958067 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
15 Hb_000106_130 0.1574711054 - - unnamed protein product [Vitis vinifera]
16 Hb_001910_020 0.1575945978 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
17 Hb_000205_120 0.1582028205 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
18 Hb_001894_030 0.158755719 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
19 Hb_089889_020 0.1589149172 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
20 Hb_002450_040 0.1604022495 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]

Gene co-expression network

sample Hb_000789_100 Hb_000789_100 Hb_000297_110 Hb_000297_110 Hb_000789_100--Hb_000297_110 Hb_010968_010 Hb_010968_010 Hb_000789_100--Hb_010968_010 Hb_000920_280 Hb_000920_280 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000676_050 Hb_000676_050 Hb_000789_100--Hb_000676_050 Hb_000482_110 Hb_000482_110 Hb_000789_100--Hb_000482_110 Hb_000297_110--Hb_000676_050 Hb_000297_110--Hb_010968_010 Hb_002639_150 Hb_002639_150 Hb_000297_110--Hb_002639_150 Hb_001160_120 Hb_001160_120 Hb_000297_110--Hb_001160_120 Hb_001040_040 Hb_001040_040 Hb_000297_110--Hb_001040_040 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050 Hb_010968_010--Hb_000920_280 Hb_006623_020 Hb_006623_020 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070 Hb_000563_210 Hb_000563_210 Hb_001484_060--Hb_000563_210 Hb_001484_060--Hb_000676_050 Hb_001621_170 Hb_001621_170 Hb_001484_060--Hb_001621_170 Hb_000933_150 Hb_000933_150 Hb_001484_060--Hb_000933_150 Hb_001124_120 Hb_001124_120 Hb_001484_060--Hb_001124_120 Hb_002349_040 Hb_002349_040 Hb_001484_060--Hb_002349_040 Hb_000676_050--Hb_002784_050 Hb_008887_050 Hb_008887_050 Hb_000676_050--Hb_008887_050 Hb_000676_050--Hb_000933_150 Hb_000676_050--Hb_002639_150 Hb_000676_050--Hb_000205_120 Hb_002400_390 Hb_002400_390 Hb_000482_110--Hb_002400_390 Hb_004032_060 Hb_004032_060 Hb_000482_110--Hb_004032_060 Hb_004447_030 Hb_004447_030 Hb_000482_110--Hb_004447_030 Hb_000265_150 Hb_000265_150 Hb_000482_110--Hb_000265_150 Hb_000482_110--Hb_000920_280 Hb_000482_110--Hb_010968_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5237 5.28298 16.0711 7.5203 23.2241 15.7937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9009 5.7625 3.66047 2.41464 0.639815

CAGE analysis