Hb_000789_110

Information

Type -
Description -
Location Contig789: 53228-59171
Sequence    

Annotation

kegg
ID sly:543830
description profilin
nr
ID O65812.1
description RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
swissprot
ID O65812
description Profilin-1 OS=Hevea brasiliensis PE=1 SV=1
trembl
ID D6BRE6
description Profilin OS=Jatropha curcas GN=JCGZ_07349 PE=2 SV=1
Gene Ontology
ID GO:0005737
description profilin 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58212: 53269-55242 , PASA_asmbl_58213: 53269-55679 , PASA_asmbl_58215: 58589-58953 , PASA_asmbl_58216: 59907-63411
cDNA
(Sanger)
(ID:Location)		 003_O16.ab1: 53346-55586 , 009_F18.ab1: 53348-55592 , 016_A01.ab1: 53348-55592 , 020_L12.ab1: 53359-55584 , 021_G13.ab1: 53332-55586 , 024_O02.ab1: 53361-55587 , 026_K20.ab1: 53485-55585 , 030_E08.ab1: 53345-55592 , 035_C03.ab1: 53364-55586 , 036_G02.ab1: 53378-55611 , 045_G23.ab1: 53324-55617

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_110 0.0 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
2 Hb_002316_120 0.0392486959 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
3 Hb_000270_720 0.0579714087 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
4 Hb_000300_390 0.0628359205 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
5 Hb_000820_130 0.0767252319 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
6 Hb_001377_380 0.0854286671 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
7 Hb_004007_180 0.0869024535 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
8 Hb_000635_080 0.0883426041 - - 60S ribosomal protein L17A [Hevea brasiliensis]
9 Hb_006588_080 0.0901738089 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
10 Hb_120823_010 0.091673276 - - -
11 Hb_004755_030 0.0944175773 - - EG964 [Manihot glaziovii]
12 Hb_012539_020 0.0961472804 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
13 Hb_000780_210 0.0974802811 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
14 Hb_000260_200 0.0974861044 - - -
15 Hb_000172_420 0.0976868509 - - 60S ribosomal protein L30, putative [Ricinus communis]
16 Hb_000367_210 0.0988809725 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
17 Hb_001780_050 0.1025169931 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
18 Hb_005663_120 0.1034098363 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
19 Hb_001604_030 0.1039019833 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
20 Hb_001155_040 0.1039228985 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000789_110 Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000789_110--Hb_002316_120 Hb_000270_720 Hb_000270_720 Hb_000789_110--Hb_000270_720 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_000820_130 Hb_000820_130 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_004007_180 Hb_004007_180 Hb_000789_110--Hb_004007_180 Hb_002316_120--Hb_000300_390 Hb_002316_120--Hb_000270_720 Hb_002316_120--Hb_001377_380 Hb_012539_020 Hb_012539_020 Hb_002316_120--Hb_012539_020 Hb_002316_120--Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030 Hb_005663_120 Hb_005663_120 Hb_000300_390--Hb_005663_120 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_000820_130--Hb_002316_120 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_001377_380--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_001377_380--Hb_000635_080 Hb_004545_130 Hb_004545_130 Hb_001377_380--Hb_004545_130 Hb_001377_380--Hb_000300_390 Hb_004007_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_004007_180--Hb_006588_080 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.207 44.2154 81.7201 241.263 98.0092 145.652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
769.604 1091.75 362.291 131.884 77.9034

CAGE analysis