Hb_000789_130

Information

Type -
Description -
Location Contig789: 74247-76983
Sequence    

Annotation

kegg
ID rcu:RCOM_1048890
description hypothetical protein
nr
ID XP_012076837.1
description PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07346 PE=4 SV=1
Gene Ontology
ID GO:0009505
description PREDICTED: uncharacterized protein LOC105637821

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58217: 74274-77011 , PASA_asmbl_58218: 75073-75299
cDNA
(Sanger)
(ID:Location)		 002_E20.ab1: 74277-75940 , 013_K08.ab1: 74277-75013 , 046_J12.ab1: 74277-75007 , 049_M16.ab1: 74277-74992

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_130 0.0 - - PREDICTED: uncharacterized protein LOC105637821 [Jatropha curcas]
2 Hb_000816_010 0.1696155882 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
3 Hb_000984_250 0.1831549979 - - PREDICTED: uncharacterized protein LOC105630783 [Jatropha curcas]
4 Hb_010521_020 0.2348698898 - - -
5 Hb_005568_100 0.239297663 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
6 Hb_000505_110 0.2423551359 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
7 Hb_000453_140 0.2432466581 - - hypothetical protein POPTR_0009s02600g [Populus trichocarpa]
8 Hb_001952_130 0.2489146946 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
9 Hb_186857_010 0.2490445977 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
10 Hb_149838_010 0.2491838297 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
11 Hb_006915_020 0.2498539334 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_114638_010 0.2508348749 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
13 Hb_003097_080 0.2522505391 - - hypothetical protein JCGZ_24481 [Jatropha curcas]
14 Hb_000599_170 0.252541129 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
15 Hb_002475_120 0.254071797 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
16 Hb_027380_030 0.2557986217 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
17 Hb_001944_030 0.2578221895 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
18 Hb_000062_030 0.2582019152 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
19 Hb_002092_110 0.2590708732 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
20 Hb_091761_010 0.2599843049 - - Rhomboid protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000789_130 Hb_000789_130 Hb_000816_010 Hb_000816_010 Hb_000789_130--Hb_000816_010 Hb_000984_250 Hb_000984_250 Hb_000789_130--Hb_000984_250 Hb_010521_020 Hb_010521_020 Hb_000789_130--Hb_010521_020 Hb_005568_100 Hb_005568_100 Hb_000789_130--Hb_005568_100 Hb_000505_110 Hb_000505_110 Hb_000789_130--Hb_000505_110 Hb_000453_140 Hb_000453_140 Hb_000789_130--Hb_000453_140 Hb_014919_020 Hb_014919_020 Hb_000816_010--Hb_014919_020 Hb_000816_010--Hb_000984_250 Hb_003740_010 Hb_003740_010 Hb_000816_010--Hb_003740_010 Hb_059301_010 Hb_059301_010 Hb_000816_010--Hb_059301_010 Hb_045481_010 Hb_045481_010 Hb_000816_010--Hb_045481_010 Hb_001952_130 Hb_001952_130 Hb_000984_250--Hb_001952_130 Hb_006915_020 Hb_006915_020 Hb_000984_250--Hb_006915_020 Hb_010531_050 Hb_010531_050 Hb_000984_250--Hb_010531_050 Hb_000733_050 Hb_000733_050 Hb_000984_250--Hb_000733_050 Hb_013016_020 Hb_013016_020 Hb_000984_250--Hb_013016_020 Hb_010521_030 Hb_010521_030 Hb_010521_020--Hb_010521_030 Hb_001195_190 Hb_001195_190 Hb_010521_020--Hb_001195_190 Hb_010521_020--Hb_005568_100 Hb_000010_270 Hb_000010_270 Hb_010521_020--Hb_000010_270 Hb_004296_010 Hb_004296_010 Hb_010521_020--Hb_004296_010 Hb_005568_100--Hb_014919_020 Hb_002232_300 Hb_002232_300 Hb_005568_100--Hb_002232_300 Hb_005548_030 Hb_005548_030 Hb_005568_100--Hb_005548_030 Hb_001944_030 Hb_001944_030 Hb_005568_100--Hb_001944_030 Hb_000062_030 Hb_000062_030 Hb_000505_110--Hb_000062_030 Hb_000599_170 Hb_000599_170 Hb_000505_110--Hb_000599_170 Hb_008147_050 Hb_008147_050 Hb_000505_110--Hb_008147_050 Hb_001051_090 Hb_001051_090 Hb_000505_110--Hb_001051_090 Hb_004884_030 Hb_004884_030 Hb_000505_110--Hb_004884_030 Hb_013818_030 Hb_013818_030 Hb_000505_110--Hb_013818_030 Hb_003097_080 Hb_003097_080 Hb_000453_140--Hb_003097_080 Hb_027380_030 Hb_027380_030 Hb_000453_140--Hb_027380_030 Hb_002896_060 Hb_002896_060 Hb_000453_140--Hb_002896_060 Hb_002092_100 Hb_002092_100 Hb_000453_140--Hb_002092_100 Hb_000076_260 Hb_000076_260 Hb_000453_140--Hb_000076_260 Hb_007456_010 Hb_007456_010 Hb_000453_140--Hb_007456_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42899 3.18537 10.254 7.08961 17.9605 2.87907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.192278 0.0378217 0 6.02974 2.59328

CAGE analysis