Hb_000789_150

Information

Type -
Description -
Location Contig789: 85764-88700
Sequence    

Annotation

kegg
ID rcu:RCOM_1048880
description Acid phosphatase 1 precursor, putative (EC:3.1.3.2)
nr
ID XP_002514195.1
description Acid phosphatase 1 precursor, putative [Ricinus communis]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9RKF1
description Acid phosphatase 1, putative OS=Ricinus communis GN=RCOM_1048880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58219: 86926-88688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_150 0.0 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
2 Hb_012675_080 0.1514236991 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
3 Hb_013394_100 0.1580749357 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
4 Hb_108227_010 0.1620860647 - - RecName: Full=Profilin-2; AltName: Full=Pollen allergen Hev b 8.0102; AltName: Allergen=Hev b 8.0102 [Hevea brasiliensis]
5 Hb_000015_070 0.1665137257 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
6 Hb_001396_250 0.169481065 - - PREDICTED: stress-associated endoplasmic reticulum protein 2 [Jatropha curcas]
7 Hb_000671_120 0.1739934159 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
8 Hb_005107_020 0.175506423 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
9 Hb_182713_020 0.1779066828 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
10 Hb_011037_020 0.1781988105 - - unknown [Picea sitchensis]
11 Hb_003371_170 0.1829591977 - - conserved hypothetical protein [Ricinus communis]
12 Hb_183522_010 0.1836681407 - - Far upstream element-binding protein, putative [Ricinus communis]
13 Hb_011214_100 0.1931872677 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
14 Hb_004669_030 0.1937923558 - - -
15 Hb_004195_230 0.1955254562 - - conserved hypothetical protein [Ricinus communis]
16 Hb_011200_010 0.196399922 - - -
17 Hb_000342_160 0.2033778318 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
18 Hb_007083_020 0.2102078919 - - hypothetical protein F775_15403 [Aegilops tauschii]
19 Hb_001579_260 0.2119613223 - - putative ADP-ribolylation factor [Arabidopsis thaliana]
20 Hb_099298_010 0.2136609469 - - -

Gene co-expression network

sample Hb_000789_150 Hb_000789_150 Hb_012675_080 Hb_012675_080 Hb_000789_150--Hb_012675_080 Hb_013394_100 Hb_013394_100 Hb_000789_150--Hb_013394_100 Hb_108227_010 Hb_108227_010 Hb_000789_150--Hb_108227_010 Hb_000015_070 Hb_000015_070 Hb_000789_150--Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_000789_150--Hb_001396_250 Hb_000671_120 Hb_000671_120 Hb_000789_150--Hb_000671_120 Hb_003656_150 Hb_003656_150 Hb_012675_080--Hb_003656_150 Hb_012675_080--Hb_000015_070 Hb_000086_190 Hb_000086_190 Hb_012675_080--Hb_000086_190 Hb_012675_080--Hb_001396_250 Hb_006995_010 Hb_006995_010 Hb_012675_080--Hb_006995_010 Hb_011037_020 Hb_011037_020 Hb_012675_080--Hb_011037_020 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_013394_100--Hb_108227_010 Hb_108227_010--Hb_000015_070 Hb_003371_170 Hb_003371_170 Hb_108227_010--Hb_003371_170 Hb_108227_010--Hb_001396_250 Hb_108227_010--Hb_012675_080 Hb_000015_070--Hb_001396_250 Hb_000015_070--Hb_003371_170 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_001396_250--Hb_011214_100 Hb_001396_250--Hb_166480_010 Hb_014050_010 Hb_014050_010 Hb_001396_250--Hb_014050_010 Hb_002784_070 Hb_002784_070 Hb_001396_250--Hb_002784_070 Hb_004669_030 Hb_004669_030 Hb_000671_120--Hb_004669_030 Hb_132180_010 Hb_132180_010 Hb_000671_120--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_000671_120--Hb_001220_010 Hb_000342_160 Hb_000342_160 Hb_000671_120--Hb_000342_160 Hb_001233_020 Hb_001233_020 Hb_000671_120--Hb_001233_020 Hb_000671_120--Hb_011037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0476292 0.0489287 0.0727512 1.14109 0.140683 0.878969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221739 0.261367 0.150909 0.0717408 0

CAGE analysis