Hb_000789_160

Information

Type -
Description -
Location Contig789: 89219-90442
Sequence    

Annotation

kegg
ID rcu:RCOM_1048870
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_012076834.1
description PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
swissprot
ID Q9LHF1
description Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=2 SV=1
trembl
ID B9RKF0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1048870 PE=4 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat extensin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_160 0.0 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
2 Hb_000331_630 0.0688165598 - - hypothetical protein B456_008G203900 [Gossypium raimondii]
3 Hb_000614_300 0.0976877897 - - PREDICTED: BAHD acyltransferase At5g47980-like [Jatropha curcas]
4 Hb_003427_030 0.0988549905 - - -
5 Hb_000207_060 0.1037287685 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
6 Hb_002263_050 0.1099119151 - - hypothetical protein POPTR_0016s06160g [Populus trichocarpa]
7 Hb_000163_170 0.1132616666 - - -
8 Hb_058471_020 0.1146749002 - - PREDICTED: expansin-B3-like [Jatropha curcas]
9 Hb_001213_060 0.1218937792 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
10 Hb_002600_120 0.1284209252 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
11 Hb_002224_020 0.1293554525 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
12 Hb_087992_010 0.1296972484 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
13 Hb_003090_220 0.1308773246 - - PREDICTED: copper transporter 4 [Jatropha curcas]
14 Hb_003607_090 0.1332377276 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
15 Hb_149882_010 0.1344547459 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
16 Hb_003849_170 0.1353482547 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
17 Hb_050898_040 0.1359035301 - - -
18 Hb_001357_110 0.1378116079 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_005144_150 0.1386555227 - - hypothetical protein VITISV_013572 [Vitis vinifera]
20 Hb_002701_030 0.1394540308 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_000789_160 Hb_000789_160 Hb_000331_630 Hb_000331_630 Hb_000789_160--Hb_000331_630 Hb_000614_300 Hb_000614_300 Hb_000789_160--Hb_000614_300 Hb_003427_030 Hb_003427_030 Hb_000789_160--Hb_003427_030 Hb_000207_060 Hb_000207_060 Hb_000789_160--Hb_000207_060 Hb_002263_050 Hb_002263_050 Hb_000789_160--Hb_002263_050 Hb_000163_170 Hb_000163_170 Hb_000789_160--Hb_000163_170 Hb_000331_630--Hb_000614_300 Hb_000331_630--Hb_002263_050 Hb_001357_110 Hb_001357_110 Hb_000331_630--Hb_001357_110 Hb_003680_240 Hb_003680_240 Hb_000331_630--Hb_003680_240 Hb_000331_630--Hb_000207_060 Hb_000614_300--Hb_002263_050 Hb_000614_300--Hb_001357_110 Hb_000227_290 Hb_000227_290 Hb_000614_300--Hb_000227_290 Hb_002308_040 Hb_002308_040 Hb_000614_300--Hb_002308_040 Hb_177208_010 Hb_177208_010 Hb_000614_300--Hb_177208_010 Hb_002224_020 Hb_002224_020 Hb_003427_030--Hb_002224_020 Hb_000185_180 Hb_000185_180 Hb_003427_030--Hb_000185_180 Hb_007477_010 Hb_007477_010 Hb_003427_030--Hb_007477_010 Hb_149882_010 Hb_149882_010 Hb_003427_030--Hb_149882_010 Hb_087992_010 Hb_087992_010 Hb_003427_030--Hb_087992_010 Hb_003090_220 Hb_003090_220 Hb_000207_060--Hb_003090_220 Hb_001818_010 Hb_001818_010 Hb_000207_060--Hb_001818_010 Hb_004705_060 Hb_004705_060 Hb_000207_060--Hb_004705_060 Hb_009367_070 Hb_009367_070 Hb_000207_060--Hb_009367_070 Hb_000408_060 Hb_000408_060 Hb_000207_060--Hb_000408_060 Hb_002263_050--Hb_001357_110 Hb_002263_050--Hb_002308_040 Hb_002471_310 Hb_002471_310 Hb_002263_050--Hb_002471_310 Hb_002263_050--Hb_000227_290 Hb_003607_090 Hb_003607_090 Hb_000163_170--Hb_003607_090 Hb_003849_170 Hb_003849_170 Hb_000163_170--Hb_003849_170 Hb_000910_030 Hb_000910_030 Hb_000163_170--Hb_000910_030 Hb_005144_150 Hb_005144_150 Hb_000163_170--Hb_005144_150 Hb_002869_090 Hb_002869_090 Hb_000163_170--Hb_002869_090 Hb_005332_160 Hb_005332_160 Hb_000163_170--Hb_005332_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0778825 4.98777 20.9689 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.7723 4.2619

CAGE analysis