Hb_000789_200

Information

Type -
Description -
Location Contig789: 159295-165241
Sequence    

Annotation

kegg
ID rcu:RCOM_1048840
description mitochondrial processing peptidase alpha subunit, putative (EC:3.4.24.64)
nr
ID XP_002514191.1
description mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
swissprot
ID P29677
description Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1
trembl
ID B9RKE7
description Mitochondrial processing peptidase alpha subunit, putative OS=Ricinus communis GN=RCOM_1048840 PE=3 SV=1
Gene Ontology
ID GO:0004222
description mitochondrial-processing peptidase subunit alpha-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58223: 159696-165165
cDNA
(Sanger)
(ID:Location)		 047_O13.ab1: 163627-165165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_200 0.0 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
2 Hb_027073_020 0.0603336207 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
3 Hb_002768_060 0.066243322 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X1 [Jatropha curcas]
4 Hb_000656_010 0.067815522 - - PREDICTED: uncharacterized protein LOC105631354 isoform X1 [Jatropha curcas]
5 Hb_004480_100 0.0680501973 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
6 Hb_000720_050 0.0713282024 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
7 Hb_001789_110 0.0717611953 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000352_310 0.0727738545 - - hypothetical protein CISIN_1g0017891mg, partial [Citrus sinensis]
9 Hb_000189_550 0.0775552866 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
10 Hb_122968_010 0.0775951253 - - hypothetical protein JCGZ_23576 [Jatropha curcas]
11 Hb_003544_160 0.0781584933 - - -
12 Hb_001876_010 0.0782314937 - - PREDICTED: arginyl-tRNA--protein transferase 2-like isoform X1 [Jatropha curcas]
13 Hb_001975_150 0.0815156035 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
14 Hb_000053_040 0.0843043909 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
15 Hb_000504_180 0.0848450009 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
16 Hb_002908_050 0.0853533732 - - hypothetical protein CISIN_1g0022902mg, partial [Citrus sinensis]
17 Hb_000359_210 0.0864324065 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003106_190 0.0871418902 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
19 Hb_001951_220 0.0883005561 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X5 [Jatropha curcas]
20 Hb_002414_050 0.0883693092 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]

Gene co-expression network

sample Hb_000789_200 Hb_000789_200 Hb_027073_020 Hb_027073_020 Hb_000789_200--Hb_027073_020 Hb_002768_060 Hb_002768_060 Hb_000789_200--Hb_002768_060 Hb_000656_010 Hb_000656_010 Hb_000789_200--Hb_000656_010 Hb_004480_100 Hb_004480_100 Hb_000789_200--Hb_004480_100 Hb_000720_050 Hb_000720_050 Hb_000789_200--Hb_000720_050 Hb_001789_110 Hb_001789_110 Hb_000789_200--Hb_001789_110 Hb_027073_020--Hb_001789_110 Hb_001999_310 Hb_001999_310 Hb_027073_020--Hb_001999_310 Hb_029243_030 Hb_029243_030 Hb_027073_020--Hb_029243_030 Hb_122968_010 Hb_122968_010 Hb_027073_020--Hb_122968_010 Hb_000406_200 Hb_000406_200 Hb_027073_020--Hb_000406_200 Hb_001876_010 Hb_001876_010 Hb_002768_060--Hb_001876_010 Hb_002768_060--Hb_004480_100 Hb_003544_160 Hb_003544_160 Hb_002768_060--Hb_003544_160 Hb_002908_050 Hb_002908_050 Hb_002768_060--Hb_002908_050 Hb_004679_030 Hb_004679_030 Hb_002768_060--Hb_004679_030 Hb_000656_010--Hb_001876_010 Hb_001629_030 Hb_001629_030 Hb_000656_010--Hb_001629_030 Hb_005976_080 Hb_005976_080 Hb_000656_010--Hb_005976_080 Hb_000189_550 Hb_000189_550 Hb_000656_010--Hb_000189_550 Hb_013726_090 Hb_013726_090 Hb_000656_010--Hb_013726_090 Hb_004480_100--Hb_002908_050 Hb_001789_150 Hb_001789_150 Hb_004480_100--Hb_001789_150 Hb_004480_100--Hb_001876_010 Hb_001951_220 Hb_001951_220 Hb_004480_100--Hb_001951_220 Hb_000720_050--Hb_001789_110 Hb_188281_040 Hb_188281_040 Hb_000720_050--Hb_188281_040 Hb_001008_120 Hb_001008_120 Hb_000720_050--Hb_001008_120 Hb_000441_090 Hb_000441_090 Hb_000720_050--Hb_000441_090 Hb_001936_090 Hb_001936_090 Hb_000720_050--Hb_001936_090 Hb_003517_040 Hb_003517_040 Hb_001789_110--Hb_003517_040 Hb_007413_010 Hb_007413_010 Hb_001789_110--Hb_007413_010 Hb_001789_110--Hb_122968_010 Hb_001789_110--Hb_188281_040 Hb_006913_020 Hb_006913_020 Hb_001789_110--Hb_006913_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.607 14.9454 12.0574 20.9964 12.6469 15.3129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.1495 17.0323 15.2464 26.136 34.7866

CAGE analysis