Hb_000789_230

Information

Type -
Description -
Location Contig789: 177540-179279
Sequence    

Annotation

kegg
ID rcu:RCOM_1048810
description AP-4 complex subunit sigma-1, putative
nr
ID XP_012076827.1
description PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
swissprot
ID O82201
description AP-4 complex subunit sigma OS=Arabidopsis thaliana GN=At2g19790 PE=1 SV=1
trembl
ID A0A067KFM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07339 PE=4 SV=1
Gene Ontology
ID GO:0016020
description ap-4 complex subunit sigma

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58228: 177651-179275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_230 0.0 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
2 Hb_000016_080 0.0600086567 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
3 Hb_002110_200 0.063953729 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_007065_010 0.0646438261 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
5 Hb_000254_050 0.0680736311 - - hypothetical protein VITISV_010510 [Vitis vinifera]
6 Hb_017413_010 0.0698647876 - - -
7 Hb_005463_140 0.0756603594 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
8 Hb_001512_080 0.0769800097 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
9 Hb_072922_020 0.077897071 - - SNARE-like superfamily protein [Theobroma cacao]
10 Hb_033153_060 0.0792927012 - - Transcription elongation factor, putative [Ricinus communis]
11 Hb_002843_140 0.0825049916 - - hypothetical protein JCGZ_20933 [Jatropha curcas]
12 Hb_027654_050 0.0839723011 - - PREDICTED: uncharacterized protein LOC105646592 [Jatropha curcas]
13 Hb_004459_040 0.0847205676 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
14 Hb_007576_170 0.0851641033 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003025_040 0.0870071686 - - PREDICTED: elongin-A [Jatropha curcas]
16 Hb_017225_020 0.0870335995 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
17 Hb_017491_060 0.0881322914 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
18 Hb_002798_020 0.0883459259 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
19 Hb_000224_140 0.0903043444 - - ribonuclease z, chloroplast, putative [Ricinus communis]
20 Hb_002918_290 0.0929951448 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000789_230 Hb_000789_230 Hb_000016_080 Hb_000016_080 Hb_000789_230--Hb_000016_080 Hb_002110_200 Hb_002110_200 Hb_000789_230--Hb_002110_200 Hb_007065_010 Hb_007065_010 Hb_000789_230--Hb_007065_010 Hb_000254_050 Hb_000254_050 Hb_000789_230--Hb_000254_050 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_005463_140 Hb_005463_140 Hb_000789_230--Hb_005463_140 Hb_000016_080--Hb_000254_050 Hb_000016_080--Hb_007065_010 Hb_000735_090 Hb_000735_090 Hb_000016_080--Hb_000735_090 Hb_001728_060 Hb_001728_060 Hb_000016_080--Hb_001728_060 Hb_002613_020 Hb_002613_020 Hb_000016_080--Hb_002613_020 Hb_002110_200--Hb_000254_050 Hb_001512_080 Hb_001512_080 Hb_002110_200--Hb_001512_080 Hb_001776_160 Hb_001776_160 Hb_002110_200--Hb_001776_160 Hb_027654_050 Hb_027654_050 Hb_002110_200--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_002110_200--Hb_000453_120 Hb_002798_020 Hb_002798_020 Hb_007065_010--Hb_002798_020 Hb_007065_010--Hb_000735_090 Hb_007065_010--Hb_002613_020 Hb_001989_090 Hb_001989_090 Hb_007065_010--Hb_001989_090 Hb_000254_050--Hb_001512_080 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_005269_080 Hb_005269_080 Hb_000254_050--Hb_005269_080 Hb_000331_450 Hb_000331_450 Hb_017413_010--Hb_000331_450 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_072922_020 Hb_072922_020 Hb_005463_140--Hb_072922_020 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_005463_140--Hb_001512_080 Hb_000302_280 Hb_000302_280 Hb_005463_140--Hb_000302_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6164 4.33024 12.6378 25.1075 16.8313 16.2331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7446 57.4267 29.9929 20.0731 20.5413

CAGE analysis