Hb_000789_250

Information

Type -
Description -
Location Contig789: 192466-205967
Sequence    

Annotation

kegg
ID tcc:TCM_037740
description Uncharacterized protein isoform 1
nr
ID XP_012076823.1
description PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061GM18
description Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_037740 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gmp synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58231: 192387-205271 , PASA_asmbl_58232: 189143-192804
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_250 0.0 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
2 Hb_000313_120 0.0607560363 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
3 Hb_020378_030 0.0673129593 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
4 Hb_012395_140 0.0683643175 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
5 Hb_000537_050 0.0699545509 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
6 Hb_001369_130 0.0701274499 - - PREDICTED: autophagy-related protein 3 isoform X1 [Jatropha curcas]
7 Hb_004586_220 0.0713754566 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
8 Hb_001754_040 0.0720071939 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
9 Hb_000395_070 0.072467412 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
10 Hb_002205_250 0.0729506481 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
11 Hb_000679_270 0.0740845961 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
12 Hb_011618_090 0.0762154499 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
13 Hb_004586_290 0.0788052547 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
14 Hb_000003_100 0.0795386018 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
15 Hb_003120_080 0.0804291472 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
16 Hb_140049_080 0.0804396243 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
17 Hb_001814_030 0.0810477703 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
18 Hb_002815_030 0.0824864273 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
19 Hb_003835_070 0.0826426268 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
20 Hb_001221_080 0.0827972853 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000789_250 Hb_000789_250 Hb_000313_120 Hb_000313_120 Hb_000789_250--Hb_000313_120 Hb_020378_030 Hb_020378_030 Hb_000789_250--Hb_020378_030 Hb_012395_140 Hb_012395_140 Hb_000789_250--Hb_012395_140 Hb_000537_050 Hb_000537_050 Hb_000789_250--Hb_000537_050 Hb_001369_130 Hb_001369_130 Hb_000789_250--Hb_001369_130 Hb_004586_220 Hb_004586_220 Hb_000789_250--Hb_004586_220 Hb_003058_260 Hb_003058_260 Hb_000313_120--Hb_003058_260 Hb_001628_070 Hb_001628_070 Hb_000313_120--Hb_001628_070 Hb_000215_140 Hb_000215_140 Hb_000313_120--Hb_000215_140 Hb_000317_370 Hb_000317_370 Hb_000313_120--Hb_000317_370 Hb_000412_010 Hb_000412_010 Hb_000313_120--Hb_000412_010 Hb_020378_030--Hb_004586_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_001814_030 Hb_001814_030 Hb_020378_030--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_020378_030--Hb_000592_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040 Hb_000395_070 Hb_000395_070 Hb_012395_140--Hb_000395_070 Hb_001550_060 Hb_001550_060 Hb_012395_140--Hb_001550_060 Hb_000579_230 Hb_000579_230 Hb_012395_140--Hb_000579_230 Hb_002329_040 Hb_002329_040 Hb_012395_140--Hb_002329_040 Hb_002815_030 Hb_002815_030 Hb_012395_140--Hb_002815_030 Hb_012395_140--Hb_001814_030 Hb_000537_050--Hb_004586_220 Hb_000537_050--Hb_000592_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_002890_130 Hb_002890_130 Hb_000537_050--Hb_002890_130 Hb_000975_040 Hb_000975_040 Hb_001369_130--Hb_000975_040 Hb_001369_130--Hb_012395_140 Hb_000958_140 Hb_000958_140 Hb_001369_130--Hb_000958_140 Hb_000462_060 Hb_000462_060 Hb_001369_130--Hb_000462_060 Hb_004267_040 Hb_004267_040 Hb_001369_130--Hb_004267_040 Hb_004586_220--Hb_001814_030 Hb_000170_090 Hb_000170_090 Hb_004586_220--Hb_000170_090 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_004586_220--Hb_000441_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.2986 8.73781 5.94461 7.32972 7.26145 6.18789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.53072 2.64035 6.90767 8.47758 7.01358

CAGE analysis