Hb_000789_320

Information

Type transcription factor
Description TF Family: LUG
Location Contig789: 247297-255486
Sequence    

Annotation

kegg
ID rcu:RCOM_1720840
description WD-repeat protein, putative
nr
ID XP_012085117.1
description PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID A0A067K2A0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17553 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58239: 247454-249221 , PASA_asmbl_58240: 249238-250541 , PASA_asmbl_58242: 253246-254680 , PASA_asmbl_58243: 253246-254202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000789_320 0.0 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
2 Hb_171900_090 0.0528502084 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000339_040 0.058892091 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
4 Hb_001623_270 0.0631795667 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
5 Hb_001025_090 0.0642007708 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
6 Hb_000866_310 0.0644537456 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
7 Hb_001153_210 0.0663588058 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
8 Hb_003861_060 0.0676147829 - - PREDICTED: treacle protein [Jatropha curcas]
9 Hb_183433_010 0.0706743997 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
10 Hb_004052_080 0.0728521323 - - conserved hypothetical protein [Ricinus communis]
11 Hb_014834_150 0.0734576895 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_000416_110 0.0742330913 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
13 Hb_000176_020 0.0751223317 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
14 Hb_000144_070 0.0772840931 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002876_230 0.0775010842 - - PREDICTED: uncharacterized protein LOC105633933 [Jatropha curcas]
16 Hb_002445_100 0.0782184013 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
17 Hb_001776_060 0.0782748297 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
18 Hb_001186_090 0.0785340038 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
19 Hb_000270_470 0.0788572234 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
20 Hb_000260_680 0.0789351126 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]

Gene co-expression network

sample Hb_000789_320 Hb_000789_320 Hb_171900_090 Hb_171900_090 Hb_000789_320--Hb_171900_090 Hb_000339_040 Hb_000339_040 Hb_000789_320--Hb_000339_040 Hb_001623_270 Hb_001623_270 Hb_000789_320--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000789_320--Hb_001025_090 Hb_000866_310 Hb_000866_310 Hb_000789_320--Hb_000866_310 Hb_001153_210 Hb_001153_210 Hb_000789_320--Hb_001153_210 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_002272_050 Hb_002272_050 Hb_171900_090--Hb_002272_050 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_171900_090--Hb_001025_090 Hb_004052_080 Hb_004052_080 Hb_000339_040--Hb_004052_080 Hb_001456_060 Hb_001456_060 Hb_000339_040--Hb_001456_060 Hb_002876_230 Hb_002876_230 Hb_000339_040--Hb_002876_230 Hb_009911_030 Hb_009911_030 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_005867_070 Hb_005867_070 Hb_000339_040--Hb_005867_070 Hb_001623_270--Hb_000176_020 Hb_001623_270--Hb_183433_010 Hb_001623_270--Hb_171900_090 Hb_014834_150 Hb_014834_150 Hb_001623_270--Hb_014834_150 Hb_000230_400 Hb_000230_400 Hb_001623_270--Hb_000230_400 Hb_004807_020 Hb_004807_020 Hb_001025_090--Hb_004807_020 Hb_000270_470 Hb_000270_470 Hb_001025_090--Hb_000270_470 Hb_001025_090--Hb_000176_020 Hb_000875_080 Hb_000875_080 Hb_001025_090--Hb_000875_080 Hb_007441_020 Hb_007441_020 Hb_000866_310--Hb_007441_020 Hb_004994_010 Hb_004994_010 Hb_000866_310--Hb_004994_010 Hb_000260_680 Hb_000260_680 Hb_000866_310--Hb_000260_680 Hb_000416_110 Hb_000416_110 Hb_000866_310--Hb_000416_110 Hb_002445_100 Hb_002445_100 Hb_000866_310--Hb_002445_100 Hb_138435_010 Hb_138435_010 Hb_001153_210--Hb_138435_010 Hb_002986_100 Hb_002986_100 Hb_001153_210--Hb_002986_100 Hb_001153_210--Hb_005867_070 Hb_003861_050 Hb_003861_050 Hb_001153_210--Hb_003861_050 Hb_004020_040 Hb_004020_040 Hb_001153_210--Hb_004020_040 Hb_001153_210--Hb_000339_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.99145 3.84006 7.7747 3.88102 3.0974 3.92803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.56491 4.67528 2.59188 3.53356 3.94345

CAGE analysis