Hb_000792_010

Information

Type -
Description -
Location Contig792: 11680-30712
Sequence    

Annotation

kegg
ID pop:POPTR_0016s11810g
description hypothetical protein
nr
ID XP_012087918.1
description PREDICTED: mRNA-capping enzyme [Jatropha curcas]
swissprot
ID O55236
description mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1
trembl
ID A0A067JNU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25057 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mrna-capping enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58386: 11744-30699 , PASA_asmbl_58387: 11744-30645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_010 0.0 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
2 Hb_000329_710 0.0420444623 - - PREDICTED: E3 ubiquitin-protein ligase BRE1-like 1 isoform X1 [Jatropha curcas]
3 Hb_002518_260 0.0465705143 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
4 Hb_000028_480 0.0556269182 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
5 Hb_003411_040 0.0573021213 - - unnamed protein product [Coffea canephora]
6 Hb_001004_060 0.0580746717 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
7 Hb_011386_010 0.0590358673 - - mitochondrial carrier protein, putative [Ricinus communis]
8 Hb_001417_030 0.0599468906 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
9 Hb_000041_110 0.0612432997 - - PREDICTED: WW domain-binding protein 11 isoform X1 [Jatropha curcas]
10 Hb_000111_290 0.0627968639 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
11 Hb_004567_090 0.0649382662 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
12 Hb_001341_170 0.0653096192 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
13 Hb_005054_090 0.0662097506 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
14 Hb_002263_020 0.0664556731 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
15 Hb_000032_520 0.0667770867 - - PREDICTED: F-box protein SKIP8-like [Jatropha curcas]
16 Hb_028912_050 0.0668241793 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
17 Hb_000494_070 0.0684425926 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
18 Hb_001008_120 0.0689914796 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
19 Hb_009545_100 0.0694740816 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
20 Hb_000340_530 0.0696836062 - - hypothetical protein VITISV_016664 [Vitis vinifera]

Gene co-expression network

sample Hb_000792_010 Hb_000792_010 Hb_000329_710 Hb_000329_710 Hb_000792_010--Hb_000329_710 Hb_002518_260 Hb_002518_260 Hb_000792_010--Hb_002518_260 Hb_000028_480 Hb_000028_480 Hb_000792_010--Hb_000028_480 Hb_003411_040 Hb_003411_040 Hb_000792_010--Hb_003411_040 Hb_001004_060 Hb_001004_060 Hb_000792_010--Hb_001004_060 Hb_011386_010 Hb_011386_010 Hb_000792_010--Hb_011386_010 Hb_000329_710--Hb_011386_010 Hb_000329_710--Hb_001004_060 Hb_000329_710--Hb_002518_260 Hb_009486_140 Hb_009486_140 Hb_000329_710--Hb_009486_140 Hb_000041_110 Hb_000041_110 Hb_000329_710--Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_002518_260--Hb_000028_480 Hb_002518_260--Hb_009486_140 Hb_002518_260--Hb_011386_010 Hb_007479_040 Hb_007479_040 Hb_000028_480--Hb_007479_040 Hb_001198_100 Hb_001198_100 Hb_000028_480--Hb_001198_100 Hb_000976_300 Hb_000976_300 Hb_000028_480--Hb_000976_300 Hb_028912_050 Hb_028912_050 Hb_000028_480--Hb_028912_050 Hb_001814_030 Hb_001814_030 Hb_003411_040--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_003411_040--Hb_000592_030 Hb_004567_090 Hb_004567_090 Hb_003411_040--Hb_004567_090 Hb_000111_290 Hb_000111_290 Hb_003411_040--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003411_040--Hb_001417_030 Hb_000327_270 Hb_000327_270 Hb_001004_060--Hb_000327_270 Hb_001999_290 Hb_001999_290 Hb_001004_060--Hb_001999_290 Hb_001205_230 Hb_001205_230 Hb_001004_060--Hb_001205_230 Hb_005736_020 Hb_005736_020 Hb_001004_060--Hb_005736_020 Hb_005054_110 Hb_005054_110 Hb_011386_010--Hb_005054_110 Hb_002078_350 Hb_002078_350 Hb_011386_010--Hb_002078_350 Hb_156279_020 Hb_156279_020 Hb_011386_010--Hb_156279_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.389 12.6853 7.77929 9.11284 11.818 13.8778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.71371 12.6577 12.6399 13.4705 13.6968

CAGE analysis