Hb_000792_040

Information

Type -
Description -
Location Contig792: 101288-104121
Sequence    

Annotation

kegg
ID rcu:RCOM_0085180
description 3-oxo-5-alpha-steroid 4-dehydrogenase, putative (EC:1.3.99.5)
nr
ID XP_012087922.1
description PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
swissprot
ID Q2QDF6
description Steroid 5-alpha-reductase DET2 OS=Gossypium hirsutum GN=DET2 PE=1 SV=1
trembl
ID A0A067JY64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25058 PE=4 SV=1
Gene Ontology
ID GO:0005737
description steroid 5-alpha-reductase det2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58394: 103289-104164
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_040 0.0 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
2 Hb_000302_200 0.0672751436 - - ornithine cyclodeaminase, putative [Ricinus communis]
3 Hb_185830_070 0.1133042323 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
4 Hb_004450_070 0.1159521623 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
5 Hb_007576_200 0.1163240774 - - amino acid transporter, putative [Ricinus communis]
6 Hb_006501_160 0.1171288346 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
7 Hb_008246_020 0.1179047829 - - amidophosphoribosyltransferase, putative [Ricinus communis]
8 Hb_002153_030 0.1183421327 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
9 Hb_083799_010 0.1197534319 - - ubiquitin-protein ligase, putative [Ricinus communis]
10 Hb_000002_270 0.1207203191 - - hypothetical protein VITISV_043897 [Vitis vinifera]
11 Hb_002995_040 0.1214639139 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
12 Hb_019280_010 0.1234575756 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
13 Hb_000009_120 0.1237337253 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
14 Hb_002213_020 0.1242615077 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
15 Hb_000080_110 0.1246489316 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
16 Hb_001019_050 0.1254176861 - - PREDICTED: importin-13 [Jatropha curcas]
17 Hb_006531_020 0.12621817 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
18 Hb_001105_160 0.1262216513 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
19 Hb_004994_090 0.1267404761 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
20 Hb_004677_050 0.1269607831 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000792_040 Hb_000792_040 Hb_000302_200 Hb_000302_200 Hb_000792_040--Hb_000302_200 Hb_185830_070 Hb_185830_070 Hb_000792_040--Hb_185830_070 Hb_004450_070 Hb_004450_070 Hb_000792_040--Hb_004450_070 Hb_007576_200 Hb_007576_200 Hb_000792_040--Hb_007576_200 Hb_006501_160 Hb_006501_160 Hb_000792_040--Hb_006501_160 Hb_008246_020 Hb_008246_020 Hb_000792_040--Hb_008246_020 Hb_004994_090 Hb_004994_090 Hb_000302_200--Hb_004994_090 Hb_000302_200--Hb_006501_160 Hb_001031_090 Hb_001031_090 Hb_000302_200--Hb_001031_090 Hb_005215_020 Hb_005215_020 Hb_000302_200--Hb_005215_020 Hb_002995_040 Hb_002995_040 Hb_000302_200--Hb_002995_040 Hb_000940_150 Hb_000940_150 Hb_185830_070--Hb_000940_150 Hb_000175_120 Hb_000175_120 Hb_185830_070--Hb_000175_120 Hb_002027_190 Hb_002027_190 Hb_185830_070--Hb_002027_190 Hb_000631_110 Hb_000631_110 Hb_185830_070--Hb_000631_110 Hb_000574_530 Hb_000574_530 Hb_185830_070--Hb_000574_530 Hb_004218_250 Hb_004218_250 Hb_185830_070--Hb_004218_250 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_003747_210 Hb_003747_210 Hb_007576_200--Hb_003747_210 Hb_000371_060 Hb_000371_060 Hb_007576_200--Hb_000371_060 Hb_000676_040 Hb_000676_040 Hb_007576_200--Hb_000676_040 Hb_000656_150 Hb_000656_150 Hb_007576_200--Hb_000656_150 Hb_007576_200--Hb_000302_200 Hb_002122_080 Hb_002122_080 Hb_007576_200--Hb_002122_080 Hb_073171_100 Hb_073171_100 Hb_006501_160--Hb_073171_100 Hb_000347_450 Hb_000347_450 Hb_006501_160--Hb_000347_450 Hb_028960_030 Hb_028960_030 Hb_006501_160--Hb_028960_030 Hb_001269_380 Hb_001269_380 Hb_006501_160--Hb_001269_380 Hb_000997_180 Hb_000997_180 Hb_006501_160--Hb_000997_180 Hb_001105_160 Hb_001105_160 Hb_008246_020--Hb_001105_160 Hb_005550_010 Hb_005550_010 Hb_008246_020--Hb_005550_010 Hb_008246_020--Hb_019280_010 Hb_006441_020 Hb_006441_020 Hb_008246_020--Hb_006441_020 Hb_001157_200 Hb_001157_200 Hb_008246_020--Hb_001157_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9663 45.3661 9.96065 33.6309 10.2412 16.1603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.2564 9.64458 11.5139 47.134 26.6264

CAGE analysis