Hb_000792_080

Information

Type -
Description -
Location Contig792: 132429-132849
Sequence    

Annotation

kegg
ID sly:101258019
description ataxin-3 homolog
nr
ID KJB76899.1
description hypothetical protein B456_012G111300, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2V549
description Gossypium raimondii chromosome 12, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_012G111300 PE=4 SV=1
Gene Ontology
ID GO:0008152
description ataxin-3 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58401: 132440-132807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_080 0.0 - - hypothetical protein B456_012G111300, partial [Gossypium raimondii]
2 Hb_023051_010 0.1689383883 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
3 Hb_011781_040 0.1757168215 - - -
4 Hb_048103_010 0.229954868 - - -
5 Hb_055339_010 0.2758708387 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
6 Hb_001673_030 0.2864519666 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
7 Hb_001032_030 0.2874893863 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
8 Hb_007508_040 0.2925156967 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
9 Hb_000505_070 0.3096703314 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
10 Hb_004052_160 0.3157780401 - - Chain A, Rna Binding Protein
11 Hb_034667_020 0.3164848889 - - conserved hypothetical protein [Ricinus communis]
12 Hb_057247_010 0.3212421889 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
13 Hb_000982_150 0.3216710481 transcription factor TF Family: Orphans histidine kinase 1 plant, putative [Ricinus communis]
14 Hb_063716_060 0.3228741493 - - conserved hypothetical protein [Ricinus communis]
15 Hb_094437_010 0.3237209251 - - -
16 Hb_000050_140 0.3249125786 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 isoform X1 [Populus euphratica]
17 Hb_011139_060 0.3317301921 - - -
18 Hb_000377_140 0.3327157538 - - -
19 Hb_124961_010 0.3328357298 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
20 Hb_170532_010 0.3366900826 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000792_080 Hb_000792_080 Hb_023051_010 Hb_023051_010 Hb_000792_080--Hb_023051_010 Hb_011781_040 Hb_011781_040 Hb_000792_080--Hb_011781_040 Hb_048103_010 Hb_048103_010 Hb_000792_080--Hb_048103_010 Hb_055339_010 Hb_055339_010 Hb_000792_080--Hb_055339_010 Hb_001673_030 Hb_001673_030 Hb_000792_080--Hb_001673_030 Hb_001032_030 Hb_001032_030 Hb_000792_080--Hb_001032_030 Hb_000377_140 Hb_000377_140 Hb_023051_010--Hb_000377_140 Hb_023051_010--Hb_048103_010 Hb_004052_160 Hb_004052_160 Hb_023051_010--Hb_004052_160 Hb_000982_150 Hb_000982_150 Hb_023051_010--Hb_000982_150 Hb_023051_010--Hb_011781_040 Hb_011781_040--Hb_001032_030 Hb_063716_060 Hb_063716_060 Hb_011781_040--Hb_063716_060 Hb_094437_010 Hb_094437_010 Hb_011781_040--Hb_094437_010 Hb_115045_010 Hb_115045_010 Hb_011781_040--Hb_115045_010 Hb_002659_130 Hb_002659_130 Hb_048103_010--Hb_002659_130 Hb_009372_050 Hb_009372_050 Hb_048103_010--Hb_009372_050 Hb_000258_360 Hb_000258_360 Hb_048103_010--Hb_000258_360 Hb_048103_010--Hb_004052_160 Hb_000997_010 Hb_000997_010 Hb_055339_010--Hb_000997_010 Hb_076233_020 Hb_076233_020 Hb_055339_010--Hb_076233_020 Hb_014361_050 Hb_014361_050 Hb_055339_010--Hb_014361_050 Hb_004570_050 Hb_004570_050 Hb_055339_010--Hb_004570_050 Hb_036693_010 Hb_036693_010 Hb_055339_010--Hb_036693_010 Hb_007188_060 Hb_007188_060 Hb_055339_010--Hb_007188_060 Hb_020549_010 Hb_020549_010 Hb_001673_030--Hb_020549_010 Hb_001676_030 Hb_001676_030 Hb_001673_030--Hb_001676_030 Hb_000071_200 Hb_000071_200 Hb_001673_030--Hb_000071_200 Hb_000270_860 Hb_000270_860 Hb_001673_030--Hb_000270_860 Hb_005539_300 Hb_005539_300 Hb_001673_030--Hb_005539_300 Hb_017895_010 Hb_017895_010 Hb_001032_030--Hb_017895_010 Hb_001032_030--Hb_115045_010 Hb_000907_040 Hb_000907_040 Hb_001032_030--Hb_000907_040 Hb_002540_040 Hb_002540_040 Hb_001032_030--Hb_002540_040 Hb_001032_030--Hb_094437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.410644 0.102367 0.383418 0.201794 0 0.653724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis