Hb_000792_110

Information

Type -
Description -
Location Contig792: 148665-155548
Sequence    

Annotation

kegg
ID rcu:RCOM_0085240
description hypothetical protein
nr
ID XP_012087933.1
description PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
swissprot
ID Q5ZHZ4
description E3 ubiquitin-protein ligase Hakai OS=Gallus gallus GN=CBLL1 PE=2 SV=1
trembl
ID A0A067JY68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25063 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase hakai

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58404: 149193-155458 , PASA_asmbl_58405: 149193-155510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_110 0.0 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
2 Hb_000211_090 0.0633446556 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
3 Hb_000779_040 0.0697172461 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
4 Hb_000890_220 0.0755295186 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
5 Hb_035360_010 0.0840020232 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
6 Hb_010189_010 0.0844515029 - - -
7 Hb_012760_200 0.0913570488 - - protein phsophatase-2a, putative [Ricinus communis]
8 Hb_000608_340 0.0923485803 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
9 Hb_001907_060 0.0930920503 - - PREDICTED: structural maintenance of chromosomes protein 5 [Jatropha curcas]
10 Hb_002918_070 0.0945367479 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
11 Hb_000016_180 0.095222286 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
12 Hb_101151_020 0.0965900212 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000185_090 0.0985278237 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
14 Hb_000211_080 0.0990708418 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000213_060 0.1018922802 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
16 Hb_003673_020 0.1031480648 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
17 Hb_000619_070 0.1053393824 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
18 Hb_013753_010 0.1060823713 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
19 Hb_004206_040 0.1074851607 - - cytochrome P450, putative [Ricinus communis]
20 Hb_113216_010 0.1082345309 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]

Gene co-expression network

sample Hb_000792_110 Hb_000792_110 Hb_000211_090 Hb_000211_090 Hb_000792_110--Hb_000211_090 Hb_000779_040 Hb_000779_040 Hb_000792_110--Hb_000779_040 Hb_000890_220 Hb_000890_220 Hb_000792_110--Hb_000890_220 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_012760_200 Hb_012760_200 Hb_000792_110--Hb_012760_200 Hb_000211_090--Hb_000779_040 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_000211_090--Hb_000890_220 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_003673_020 Hb_003673_020 Hb_000211_090--Hb_003673_020 Hb_000779_040--Hb_000890_220 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_000779_040--Hb_003673_020 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_000890_220--Hb_012760_200 Hb_000619_070 Hb_000619_070 Hb_035360_010--Hb_000619_070 Hb_035360_010--Hb_003673_020 Hb_035360_010--Hb_000779_040 Hb_035360_010--Hb_000608_340 Hb_035360_010--Hb_000211_090 Hb_010189_010--Hb_000211_090 Hb_000213_060 Hb_000213_060 Hb_010189_010--Hb_000213_060 Hb_002837_070 Hb_002837_070 Hb_010189_010--Hb_002837_070 Hb_005000_270 Hb_005000_270 Hb_010189_010--Hb_005000_270 Hb_010189_010--Hb_002918_070 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_004032_350 Hb_004032_350 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_012760_200--Hb_013753_010 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_000331_480 Hb_000331_480 Hb_012760_200--Hb_000331_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
160.286 61.0051 14.4418 12.6125 182.579 214.448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.8846 14.8579 18.0773 20.0372 10.1135

CAGE analysis