Hb_000792_130

Information

Type -
Description -
Location Contig792: 175083-176821
Sequence    

Annotation

kegg
ID rcu:RCOM_0085700
description 60S ribosomal protein L35a, putative
nr
ID KHG28839.1
description 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
swissprot
ID Q9C912
description 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1
trembl
ID A0A0B0PWN4
description 60S ribosomal L35a-3-like protein OS=Gossypium arboreum GN=F383_10337 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58407: 175091-176890 , PASA_asmbl_58409: 175827-176108
cDNA
(Sanger)
(ID:Location)		 039_A17.ab1: 175115-176887 , 052_A10.ab1: 175110-176889

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000792_130 0.0 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
2 Hb_000152_420 0.0719875518 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
3 Hb_000102_020 0.082675791 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
4 Hb_000656_170 0.08311691 - - lsm1, putative [Ricinus communis]
5 Hb_005054_350 0.0841447407 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
6 Hb_002662_030 0.0889253783 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
7 Hb_000982_090 0.0907365686 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
8 Hb_007441_040 0.0922512348 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
9 Hb_009051_030 0.0948520778 - - PREDICTED: thioredoxin O1, mitochondrial-like [Jatropha curcas]
10 Hb_002289_120 0.0963312224 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
11 Hb_000111_380 0.0968294584 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
12 Hb_002296_040 0.0969112029 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
13 Hb_168054_010 0.0982156811 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
14 Hb_033153_090 0.099116203 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
15 Hb_005489_060 0.0995801408 - - Anamorsin, putative [Ricinus communis]
16 Hb_001057_040 0.1009041783 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
17 Hb_001369_640 0.1014112236 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]
18 Hb_024071_020 0.1015388801 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
19 Hb_007875_030 0.1018505171 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
20 Hb_001124_090 0.1019163998 - - acyl carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000792_130 Hb_000792_130 Hb_000152_420 Hb_000152_420 Hb_000792_130--Hb_000152_420 Hb_000102_020 Hb_000102_020 Hb_000792_130--Hb_000102_020 Hb_000656_170 Hb_000656_170 Hb_000792_130--Hb_000656_170 Hb_005054_350 Hb_005054_350 Hb_000792_130--Hb_005054_350 Hb_002662_030 Hb_002662_030 Hb_000792_130--Hb_002662_030 Hb_000982_090 Hb_000982_090 Hb_000792_130--Hb_000982_090 Hb_001369_640 Hb_001369_640 Hb_000152_420--Hb_001369_640 Hb_009793_010 Hb_009793_010 Hb_000152_420--Hb_009793_010 Hb_002289_120 Hb_002289_120 Hb_000152_420--Hb_002289_120 Hb_004157_030 Hb_004157_030 Hb_000152_420--Hb_004157_030 Hb_000172_320 Hb_000172_320 Hb_000152_420--Hb_000172_320 Hb_007441_040 Hb_007441_040 Hb_000102_020--Hb_007441_040 Hb_009051_030 Hb_009051_030 Hb_000102_020--Hb_009051_030 Hb_000261_140 Hb_000261_140 Hb_000102_020--Hb_000261_140 Hb_000102_020--Hb_000656_170 Hb_009182_010 Hb_009182_010 Hb_000102_020--Hb_009182_010 Hb_001214_160 Hb_001214_160 Hb_000102_020--Hb_001214_160 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000656_170--Hb_009051_030 Hb_000656_170--Hb_007441_040 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190 Hb_000120_470 Hb_000120_470 Hb_005054_350--Hb_000120_470 Hb_000768_090 Hb_000768_090 Hb_005054_350--Hb_000768_090 Hb_003435_020 Hb_003435_020 Hb_005054_350--Hb_003435_020 Hb_001758_100 Hb_001758_100 Hb_005054_350--Hb_001758_100 Hb_000032_380 Hb_000032_380 Hb_005054_350--Hb_000032_380 Hb_002078_140 Hb_002078_140 Hb_005054_350--Hb_002078_140 Hb_002296_040 Hb_002296_040 Hb_002662_030--Hb_002296_040 Hb_002596_040 Hb_002596_040 Hb_002662_030--Hb_002596_040 Hb_008695_040 Hb_008695_040 Hb_002662_030--Hb_008695_040 Hb_005400_030 Hb_005400_030 Hb_002662_030--Hb_005400_030 Hb_002662_030--Hb_000656_170 Hb_172426_040 Hb_172426_040 Hb_000982_090--Hb_172426_040 Hb_001140_370 Hb_001140_370 Hb_000982_090--Hb_001140_370 Hb_001124_090 Hb_001124_090 Hb_000982_090--Hb_001124_090 Hb_006059_050 Hb_006059_050 Hb_000982_090--Hb_006059_050 Hb_001016_030 Hb_001016_030 Hb_000982_090--Hb_001016_030 Hb_000982_090--Hb_009051_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1163 15.7527 27.5157 29.3033 16.563 47.6191
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.636 62.3515 28.9705 27.5914 9.95777

CAGE analysis