Hb_000793_040

Information

Type -
Description -
Location Contig793: 126679-136024
Sequence    

Annotation

kegg
ID rcu:RCOM_1753040
description expressed protein, putative
nr
ID XP_012089506.1
description PREDICTED: transcription factor LHW [Jatropha curcas]
swissprot
ID Q9XIN0
description Transcription factor LHW OS=Arabidopsis thaliana GN=LHW PE=1 SV=1
trembl
ID A0A067JUN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00320 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor lhw-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58438: 126300-135815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000793_040 0.0 - - PREDICTED: transcription factor LHW [Jatropha curcas]
2 Hb_001486_060 0.1093194869 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
3 Hb_002928_120 0.1105914859 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
4 Hb_005288_210 0.1193891958 - - hypothetical protein VITISV_017217 [Vitis vinifera]
5 Hb_020378_010 0.1208387978 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
6 Hb_001493_020 0.1244288055 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
7 Hb_002420_010 0.129373938 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
8 Hb_002026_080 0.1306680374 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
9 Hb_002003_040 0.1318679006 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
10 Hb_001008_110 0.1331862606 - - -
11 Hb_002833_020 0.1361966502 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
12 Hb_001900_060 0.1365939418 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
13 Hb_025432_010 0.1372198138 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
14 Hb_000818_080 0.1374596296 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
15 Hb_001832_210 0.1375392252 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
16 Hb_000020_030 0.1387444088 - - protein binding protein, putative [Ricinus communis]
17 Hb_003142_060 0.1449365341 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005181_180 0.1472234647 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000085_380 0.1482574038 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000215_250 0.14934371 - - Acid phosphatase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000793_040 Hb_000793_040 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_001493_020 Hb_001493_020 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_000818_080 Hb_000818_080 Hb_001486_060--Hb_000818_080 Hb_002026_080 Hb_002026_080 Hb_001486_060--Hb_002026_080 Hb_000483_130 Hb_000483_130 Hb_001486_060--Hb_000483_130 Hb_086336_010 Hb_086336_010 Hb_001486_060--Hb_086336_010 Hb_004657_080 Hb_004657_080 Hb_001486_060--Hb_004657_080 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_001021_030 Hb_001021_030 Hb_002928_120--Hb_001021_030 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_000438_020 Hb_000438_020 Hb_005288_210--Hb_000438_020 Hb_005288_210--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_005288_210--Hb_002671_060 Hb_003226_030 Hb_003226_030 Hb_005288_210--Hb_003226_030 Hb_002833_020 Hb_002833_020 Hb_005288_210--Hb_002833_020 Hb_020378_010--Hb_001493_020 Hb_000020_030 Hb_000020_030 Hb_020378_010--Hb_000020_030 Hb_002003_040 Hb_002003_040 Hb_020378_010--Hb_002003_040 Hb_020378_010--Hb_001486_060 Hb_029977_010 Hb_029977_010 Hb_020378_010--Hb_029977_010 Hb_001493_020--Hb_029977_010 Hb_000215_250 Hb_000215_250 Hb_001493_020--Hb_000215_250 Hb_000317_220 Hb_000317_220 Hb_001493_020--Hb_000317_220 Hb_188281_050 Hb_188281_050 Hb_001493_020--Hb_188281_050 Hb_002420_010--Hb_002003_040 Hb_082683_010 Hb_082683_010 Hb_002420_010--Hb_082683_010 Hb_002420_010--Hb_000215_250 Hb_007943_020 Hb_007943_020 Hb_002420_010--Hb_007943_020 Hb_000264_340 Hb_000264_340 Hb_002420_010--Hb_000264_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.943729 8.74972 2.98942 10.7743 0.703771 1.201
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.734882 0.382584 0.256188 13.9892 5.81199

CAGE analysis