Hb_000794_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig794: 56558-63578
Sequence    

Annotation

kegg
ID rcu:RCOM_1278150
description nucleic acid binding protein, putative
nr
ID XP_012077912.1
description PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
swissprot
ID Q9LQM3
description Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis thaliana GN=At1g32360 PE=2 SV=1
trembl
ID B9SNT2
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1278150 PE=4 SV=1
Gene Ontology
ID GO:0046872
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58452: 56570-63429 , PASA_asmbl_58453: 58135-58234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000794_050 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 12 [Jatropha curcas]
2 Hb_000368_020 0.0551753136 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
3 Hb_000926_190 0.0598340664 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
4 Hb_033720_010 0.0605176166 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
5 Hb_001390_110 0.0639369715 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
6 Hb_000853_230 0.0647450578 - - syntaxin, putative [Ricinus communis]
7 Hb_006620_020 0.0660279387 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_007026_030 0.0670196779 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
9 Hb_000002_040 0.0675318882 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
10 Hb_000334_270 0.067863811 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
11 Hb_000879_200 0.0679098245 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
12 Hb_000116_180 0.0690229646 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
13 Hb_008406_110 0.0711185746 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
14 Hb_004055_150 0.0711627518 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000498_010 0.0732720287 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
16 Hb_006355_010 0.0739601865 - - PREDICTED: protein NLRC3 [Jatropha curcas]
17 Hb_000207_310 0.0746806522 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
18 Hb_000179_030 0.0753092656 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_007007_060 0.0762198862 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
20 Hb_001828_160 0.0767829535 - - hypothetical protein F775_31105 [Aegilops tauschii]

Gene co-expression network

sample Hb_000794_050 Hb_000794_050 Hb_000368_020 Hb_000368_020 Hb_000794_050--Hb_000368_020 Hb_000926_190 Hb_000926_190 Hb_000794_050--Hb_000926_190 Hb_033720_010 Hb_033720_010 Hb_000794_050--Hb_033720_010 Hb_001390_110 Hb_001390_110 Hb_000794_050--Hb_001390_110 Hb_000853_230 Hb_000853_230 Hb_000794_050--Hb_000853_230 Hb_006620_020 Hb_006620_020 Hb_000794_050--Hb_006620_020 Hb_003467_010 Hb_003467_010 Hb_000368_020--Hb_003467_010 Hb_006960_050 Hb_006960_050 Hb_000368_020--Hb_006960_050 Hb_106552_050 Hb_106552_050 Hb_000368_020--Hb_106552_050 Hb_000926_310 Hb_000926_310 Hb_000368_020--Hb_000926_310 Hb_006824_060 Hb_006824_060 Hb_000368_020--Hb_006824_060 Hb_023386_020 Hb_023386_020 Hb_000926_190--Hb_023386_020 Hb_023386_040 Hb_023386_040 Hb_000926_190--Hb_023386_040 Hb_007054_060 Hb_007054_060 Hb_000926_190--Hb_007054_060 Hb_000334_270 Hb_000334_270 Hb_000926_190--Hb_000334_270 Hb_000879_200 Hb_000879_200 Hb_000926_190--Hb_000879_200 Hb_033720_010--Hb_023386_020 Hb_033720_010--Hb_000853_230 Hb_033720_010--Hb_000879_200 Hb_002686_250 Hb_002686_250 Hb_033720_010--Hb_002686_250 Hb_033720_010--Hb_006620_020 Hb_001936_060 Hb_001936_060 Hb_001390_110--Hb_001936_060 Hb_008406_110 Hb_008406_110 Hb_001390_110--Hb_008406_110 Hb_000390_180 Hb_000390_180 Hb_001390_110--Hb_000390_180 Hb_001390_110--Hb_000853_230 Hb_001390_110--Hb_000926_190 Hb_000853_230--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_000853_230--Hb_004055_150 Hb_000853_230--Hb_000879_200 Hb_000853_230--Hb_000390_180 Hb_001926_030 Hb_001926_030 Hb_000853_230--Hb_001926_030 Hb_006620_020--Hb_000879_200 Hb_006620_020--Hb_004055_150 Hb_006620_020--Hb_001926_030 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.6896 24.5779 21.0467 13.1245 39.3522 37.5112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8655 23.3307 17.7298 16.1495 19.0442

CAGE analysis