Hb_000796_020

Information

Type -
Description -
Location Contig796: 8692-12665
Sequence    

Annotation

kegg
ID cic:CICLE_v10017502mg
description hypothetical protein
nr
ID AGV54289.1
description ADP-ribosylation factor [Phaseolus vulgaris]
swissprot
ID O48920
description ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3
trembl
ID K4B1B8
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g100870.2 PE=3 SV=1
Gene Ontology
ID GO:0043231
description adp-ribosylation factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58536: 8702-11554
cDNA
(Sanger)
(ID:Location)		 003_P19.ab1: 8706-11374 , 018_J22.ab1: 8706-11420 , 020_C23.ab1: 8701-11364 , 023_A15.ab1: 8702-11179 , 033_G10.ab1: 8778-11134 , 036_F17.ab1: 8702-11397 , 038_O07.ab1: 8702-11374 , 038_P02.ab1: 8702-11433 , 045_D16.ab1: 8706-11426

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_020 0.0 - - ADP-ribosylation factor [Phaseolus vulgaris]
2 Hb_000683_100 0.1207921859 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
3 Hb_000776_060 0.121491399 - - histone H4 [Zea mays]
4 Hb_030992_010 0.12494488 - - acetylornithine aminotransferase, putative [Ricinus communis]
5 Hb_122636_010 0.1350487399 - - dienelactone hydrolase family protein [Populus trichocarpa]
6 Hb_004453_070 0.1451924468 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
7 Hb_000062_090 0.1483490438 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
8 Hb_001217_010 0.1496132128 - - hypothetical protein JCGZ_04022 [Jatropha curcas]
9 Hb_000483_400 0.1527682499 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
10 Hb_000671_130 0.1531016371 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
11 Hb_012760_050 0.1541985387 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
12 Hb_131684_010 0.1576631952 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001195_410 0.1614409612 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
14 Hb_000008_190 0.1690873199 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
15 Hb_001584_240 0.1695363627 - - ADP-ribosylation factor [Gossypium barbadense]
16 Hb_002217_500 0.1712634979 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
17 Hb_007926_050 0.175723026 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
18 Hb_148130_020 0.1757289341 - - -
19 Hb_126757_010 0.1787005421 - - protein phosphatase 2c, putative [Ricinus communis]
20 Hb_001824_040 0.1811065311 - - hypothetical protein M569_11359, partial [Genlisea aurea]

Gene co-expression network

sample Hb_000796_020 Hb_000796_020 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000776_060 Hb_000776_060 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_004453_070 Hb_004453_070 Hb_000796_020--Hb_004453_070 Hb_000062_090 Hb_000062_090 Hb_000796_020--Hb_000062_090 Hb_001969_020 Hb_001969_020 Hb_000683_100--Hb_001969_020 Hb_002960_130 Hb_002960_130 Hb_000683_100--Hb_002960_130 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_010577_010 Hb_010577_010 Hb_000683_100--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_000683_100--Hb_091349_010 Hb_000776_060--Hb_000062_090 Hb_000776_060--Hb_030992_010 Hb_012760_050 Hb_012760_050 Hb_000776_060--Hb_012760_050 Hb_001195_410 Hb_001195_410 Hb_000776_060--Hb_001195_410 Hb_006711_090 Hb_006711_090 Hb_000776_060--Hb_006711_090 Hb_030992_010--Hb_122636_010 Hb_030992_010--Hb_000062_090 Hb_000008_190 Hb_000008_190 Hb_030992_010--Hb_000008_190 Hb_000177_110 Hb_000177_110 Hb_030992_010--Hb_000177_110 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_002660_110 Hb_002660_110 Hb_122636_010--Hb_002660_110 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_004453_070--Hb_001195_410 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_004453_070--Hb_000062_090 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000062_090--Hb_000671_130 Hb_000062_090--Hb_012362_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.7 49.4852 43.944 292.059 11.1819 37.5217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.268 78.0506 53.2146 32.991 39.3252

CAGE analysis