Hb_000796_040

Information

Type -
Description -
Location Contig796: 18342-19859
Sequence    

Annotation

kegg
ID rcu:RCOM_1345540
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002515231.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FZ19
description Putative pentatricopeptide repeat-containing protein At1g02420 OS=Arabidopsis thaliana GN=At1g02420 PE=3 SV=2
trembl
ID B9RN92
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1345540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58543: 18199-18551 , PASA_asmbl_58545: 19581-19781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000853_210 0.0577418864 - - PREDICTED: uncharacterized protein LOC105642575 isoform X1 [Jatropha curcas]
3 Hb_004228_010 0.0664076096 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
4 Hb_007416_160 0.0699187959 - - PREDICTED: centromere-associated protein E isoform X1 [Nelumbo nucifera]
5 Hb_000009_600 0.071477499 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]
6 Hb_009503_030 0.0769144272 - - protein dimerization, putative [Ricinus communis]
7 Hb_000116_500 0.0788232276 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
8 Hb_014267_010 0.0791867699 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
9 Hb_004306_080 0.0819695982 - - PREDICTED: B-cell receptor-associated protein 31 [Jatropha curcas]
10 Hb_009545_100 0.0833247694 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
11 Hb_000034_040 0.0845121207 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
12 Hb_003605_110 0.0845652995 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
13 Hb_000739_310 0.084572356 - - PREDICTED: uncharacterized protein LOC105643091 isoform X1 [Jatropha curcas]
14 Hb_000796_030 0.0861302647 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
15 Hb_012022_090 0.0873439224 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
16 Hb_004225_050 0.0877081879 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
17 Hb_006649_050 0.0886549145 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
18 Hb_003253_040 0.0886627352 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
19 Hb_002811_060 0.088746646 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
20 Hb_001199_100 0.0892613958 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_040 Hb_000796_040 Hb_000853_210 Hb_000853_210 Hb_000796_040--Hb_000853_210 Hb_004228_010 Hb_004228_010 Hb_000796_040--Hb_004228_010 Hb_007416_160 Hb_007416_160 Hb_000796_040--Hb_007416_160 Hb_000009_600 Hb_000009_600 Hb_000796_040--Hb_000009_600 Hb_009503_030 Hb_009503_030 Hb_000796_040--Hb_009503_030 Hb_000116_500 Hb_000116_500 Hb_000796_040--Hb_000116_500 Hb_000853_210--Hb_000009_600 Hb_034432_030 Hb_034432_030 Hb_000853_210--Hb_034432_030 Hb_000853_210--Hb_004228_010 Hb_007904_030 Hb_007904_030 Hb_000853_210--Hb_007904_030 Hb_004306_080 Hb_004306_080 Hb_000853_210--Hb_004306_080 Hb_004228_010--Hb_004306_080 Hb_014267_010 Hb_014267_010 Hb_004228_010--Hb_014267_010 Hb_001472_090 Hb_001472_090 Hb_004228_010--Hb_001472_090 Hb_010417_050 Hb_010417_050 Hb_004228_010--Hb_010417_050 Hb_002493_020 Hb_002493_020 Hb_004228_010--Hb_002493_020 Hb_000031_170 Hb_000031_170 Hb_007416_160--Hb_000031_170 Hb_012799_030 Hb_012799_030 Hb_007416_160--Hb_012799_030 Hb_001205_230 Hb_001205_230 Hb_007416_160--Hb_001205_230 Hb_000034_040 Hb_000034_040 Hb_007416_160--Hb_000034_040 Hb_003440_050 Hb_003440_050 Hb_007416_160--Hb_003440_050 Hb_009851_070 Hb_009851_070 Hb_000009_600--Hb_009851_070 Hb_002234_170 Hb_002234_170 Hb_000009_600--Hb_002234_170 Hb_000009_600--Hb_009503_030 Hb_002235_300 Hb_002235_300 Hb_000009_600--Hb_002235_300 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_000116_500--Hb_009545_100 Hb_021297_050 Hb_021297_050 Hb_000116_500--Hb_021297_050 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_001195_320 Hb_001195_320 Hb_000116_500--Hb_001195_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.54701 5.66739 2.68515 5.09805 9.19877 7.52845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.5732 3.73205 7.92598 4.57471 7.25355

CAGE analysis