Hb_000796_060

Information

Type -
Description -
Location Contig796: 51789-53332
Sequence    

Annotation

kegg
ID pda:103709709
description inversin-B-like
nr
ID EMT27747.1
description Glycogenin-2 [Aegilops tauschii]
swissprot
ID O15488
description Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2
trembl
ID M8CK84
description Hexosyltransferase OS=Aegilops tauschii GN=F775_28615 PE=3 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_060 0.0 - - Glycogenin-2 [Aegilops tauschii]
2 Hb_048207_010 0.1255162918 - - heat-shock protein, putative [Ricinus communis]
3 Hb_168893_010 0.2133196013 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
4 Hb_005730_100 0.2201165794 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
5 Hb_001104_040 0.2212422731 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
6 Hb_001279_230 0.235398727 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
7 Hb_000398_130 0.2513296577 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
8 Hb_003647_120 0.2522322809 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
9 Hb_006634_010 0.256922019 - - -
10 Hb_009189_060 0.2597372623 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
11 Hb_002890_190 0.2603439015 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
12 Hb_029980_010 0.2663299256 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
13 Hb_184326_010 0.26758436 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
14 Hb_171273_010 0.2766506077 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
15 Hb_011468_010 0.2808908564 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
16 Hb_046198_020 0.2836026681 - - conserved hypothetical protein [Ricinus communis]
17 Hb_007382_020 0.2841811562 - - PREDICTED: BAG family molecular chaperone regulator 6-like [Jatropha curcas]
18 Hb_000488_030 0.2855820334 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
19 Hb_006745_020 0.2929144083 - - PREDICTED: 22.0 kDa class IV heat shock protein [Jatropha curcas]
20 Hb_004970_040 0.2941400806 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_060 Hb_000796_060 Hb_048207_010 Hb_048207_010 Hb_000796_060--Hb_048207_010 Hb_168893_010 Hb_168893_010 Hb_000796_060--Hb_168893_010 Hb_005730_100 Hb_005730_100 Hb_000796_060--Hb_005730_100 Hb_001104_040 Hb_001104_040 Hb_000796_060--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_000796_060--Hb_001279_230 Hb_000398_130 Hb_000398_130 Hb_000796_060--Hb_000398_130 Hb_048207_010--Hb_001104_040 Hb_048207_010--Hb_001279_230 Hb_006634_010 Hb_006634_010 Hb_048207_010--Hb_006634_010 Hb_009189_060 Hb_009189_060 Hb_048207_010--Hb_009189_060 Hb_048207_010--Hb_005730_100 Hb_046198_020 Hb_046198_020 Hb_168893_010--Hb_046198_020 Hb_168893_010--Hb_005730_100 Hb_020156_060 Hb_020156_060 Hb_168893_010--Hb_020156_060 Hb_029980_010 Hb_029980_010 Hb_168893_010--Hb_029980_010 Hb_085375_010 Hb_085375_010 Hb_168893_010--Hb_085375_010 Hb_002890_190 Hb_002890_190 Hb_005730_100--Hb_002890_190 Hb_000891_080 Hb_000891_080 Hb_005730_100--Hb_000891_080 Hb_005730_100--Hb_029980_010 Hb_000488_030 Hb_000488_030 Hb_005730_100--Hb_000488_030 Hb_005730_100--Hb_001104_040 Hb_005730_100--Hb_000398_130 Hb_001104_040--Hb_001279_230 Hb_004529_020 Hb_004529_020 Hb_001104_040--Hb_004529_020 Hb_116436_010 Hb_116436_010 Hb_001104_040--Hb_116436_010 Hb_003647_120 Hb_003647_120 Hb_001104_040--Hb_003647_120 Hb_092043_020 Hb_092043_020 Hb_001104_040--Hb_092043_020 Hb_001279_230--Hb_003647_120 Hb_003337_070 Hb_003337_070 Hb_001279_230--Hb_003337_070 Hb_184326_010 Hb_184326_010 Hb_001279_230--Hb_184326_010 Hb_001723_110 Hb_001723_110 Hb_001279_230--Hb_001723_110 Hb_006745_020 Hb_006745_020 Hb_001279_230--Hb_006745_020 Hb_000398_130--Hb_006745_020 Hb_000398_130--Hb_003647_120 Hb_000398_130--Hb_000488_030 Hb_000398_130--Hb_001279_230 Hb_027255_010 Hb_027255_010 Hb_000398_130--Hb_027255_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.614954 0.13908 0.125441 2.6736 0.573767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis