Hb_000796_100

Information

Type transcription factor
Description TF Family: MYB
Location Contig796: 80033-81270
Sequence    

Annotation

kegg
ID rcu:RCOM_1345780
description r2r3-myb transcription factor, putative
nr
ID XP_002515235.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID B9RN96
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1345780 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb108-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58547: 80218-81271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_100 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_064855_010 0.0673950539 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000844_020 0.0701462256 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
4 Hb_006452_140 0.0817897333 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
5 Hb_011924_030 0.0864504689 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006616_050 0.0882985795 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
7 Hb_023827_010 0.0926966534 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
8 Hb_066262_020 0.0974072843 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
9 Hb_002067_110 0.0981930323 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
10 Hb_000035_360 0.1026525592 - - PREDICTED: VQ motif-containing protein 31-like [Jatropha curcas]
11 Hb_001271_040 0.1036536946 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
12 Hb_009740_010 0.1041585567 - - receptor-kinase, putative [Ricinus communis]
13 Hb_030593_010 0.1049149634 - - hypothetical protein JCGZ_06063 [Jatropha curcas]
14 Hb_011639_130 0.1056548482 - - mads box protein, putative [Ricinus communis]
15 Hb_004829_050 0.1057144095 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
16 Hb_000871_020 0.1057723921 - - receptor-kinase, putative [Ricinus communis]
17 Hb_001403_100 0.1063778243 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
18 Hb_001104_260 0.1064331249 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
19 Hb_005204_030 0.1081508352 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
20 Hb_008078_040 0.1091284509 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]

Gene co-expression network

sample Hb_000796_100 Hb_000796_100 Hb_064855_010 Hb_064855_010 Hb_000796_100--Hb_064855_010 Hb_000844_020 Hb_000844_020 Hb_000796_100--Hb_000844_020 Hb_006452_140 Hb_006452_140 Hb_000796_100--Hb_006452_140 Hb_011924_030 Hb_011924_030 Hb_000796_100--Hb_011924_030 Hb_006616_050 Hb_006616_050 Hb_000796_100--Hb_006616_050 Hb_023827_010 Hb_023827_010 Hb_000796_100--Hb_023827_010 Hb_064855_010--Hb_000844_020 Hb_066262_020 Hb_066262_020 Hb_064855_010--Hb_066262_020 Hb_001271_040 Hb_001271_040 Hb_064855_010--Hb_001271_040 Hb_064855_010--Hb_023827_010 Hb_001403_100 Hb_001403_100 Hb_064855_010--Hb_001403_100 Hb_002067_110 Hb_002067_110 Hb_000844_020--Hb_002067_110 Hb_000844_020--Hb_001271_040 Hb_000844_020--Hb_066262_020 Hb_101778_020 Hb_101778_020 Hb_000844_020--Hb_101778_020 Hb_006124_040 Hb_006124_040 Hb_006452_140--Hb_006124_040 Hb_002648_020 Hb_002648_020 Hb_006452_140--Hb_002648_020 Hb_006452_140--Hb_001271_040 Hb_006452_140--Hb_001403_100 Hb_001104_260 Hb_001104_260 Hb_006452_140--Hb_001104_260 Hb_000871_020 Hb_000871_020 Hb_011924_030--Hb_000871_020 Hb_000035_360 Hb_000035_360 Hb_011924_030--Hb_000035_360 Hb_000284_060 Hb_000284_060 Hb_011924_030--Hb_000284_060 Hb_003847_140 Hb_003847_140 Hb_011924_030--Hb_003847_140 Hb_009740_010 Hb_009740_010 Hb_011924_030--Hb_009740_010 Hb_006616_050--Hb_064855_010 Hb_006616_050--Hb_000844_020 Hb_006616_050--Hb_001271_040 Hb_006616_050--Hb_066262_020 Hb_006616_050--Hb_006452_140 Hb_030593_010 Hb_030593_010 Hb_023827_010--Hb_030593_010 Hb_001766_090 Hb_001766_090 Hb_023827_010--Hb_001766_090 Hb_023827_010--Hb_009740_010 Hb_007658_030 Hb_007658_030 Hb_023827_010--Hb_007658_030 Hb_000484_050 Hb_000484_050 Hb_023827_010--Hb_000484_050 Hb_011909_130 Hb_011909_130 Hb_023827_010--Hb_011909_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.4046 0.055 0.143755 0.024065 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0432474 0 1.35881 0

CAGE analysis