Hb_000796_110

Information

Type -
Description -
Location Contig796: 86767-88800
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11240g
description POPTRDRAFT_245492; hypothetical protein
nr
ID XP_011040796.1
description PREDICTED: probable pectinesterase 53 [Populus euphratica]
swissprot
ID Q8VYZ3
description Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1
trembl
ID B9I9F4
description Pectinesterase OS=Populus trichocarpa GN=POPTR_0014s11240g PE=3 SV=2
Gene Ontology
ID GO:0005618
description probable pectinesterase 53

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58548: 86969-88198 , PASA_asmbl_58549: 88203-88981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_110 0.0 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
2 Hb_153258_030 0.0504402433 - - hypothetical protein RCOM_0853150 [Ricinus communis]
3 Hb_002999_020 0.0516902709 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
4 Hb_001416_120 0.053232354 - - caspase, putative [Ricinus communis]
5 Hb_000742_040 0.0592625963 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
6 Hb_090210_010 0.0631848618 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
7 Hb_000934_120 0.0736079783 - - PREDICTED: tumor necrosis factor ligand superfamily member 6 [Populus euphratica]
8 Hb_124677_070 0.0805072905 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
9 Hb_016734_110 0.0831104317 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
10 Hb_000731_180 0.0896308025 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
11 Hb_000802_040 0.090230811 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
12 Hb_010608_040 0.091779042 - - PREDICTED: aluminum-activated malate transporter 9-like [Jatropha curcas]
13 Hb_001496_150 0.0925045885 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
14 Hb_009662_040 0.0949821962 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
15 Hb_001623_560 0.0956268202 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
16 Hb_010327_040 0.1001211181 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
17 Hb_002326_090 0.1017336311 - - amino acid transporter, putative [Ricinus communis]
18 Hb_003197_050 0.104036702 - - hypothetical protein JCGZ_04279 [Jatropha curcas]
19 Hb_007292_060 0.1046484586 - - PREDICTED: uncharacterized protein LOC105632853 [Jatropha curcas]
20 Hb_004693_040 0.1055216322 - - -

Gene co-expression network

sample Hb_000796_110 Hb_000796_110 Hb_153258_030 Hb_153258_030 Hb_000796_110--Hb_153258_030 Hb_002999_020 Hb_002999_020 Hb_000796_110--Hb_002999_020 Hb_001416_120 Hb_001416_120 Hb_000796_110--Hb_001416_120 Hb_000742_040 Hb_000742_040 Hb_000796_110--Hb_000742_040 Hb_090210_010 Hb_090210_010 Hb_000796_110--Hb_090210_010 Hb_000934_120 Hb_000934_120 Hb_000796_110--Hb_000934_120 Hb_153258_030--Hb_002999_020 Hb_153258_030--Hb_090210_010 Hb_001496_150 Hb_001496_150 Hb_153258_030--Hb_001496_150 Hb_153258_030--Hb_001416_120 Hb_153258_030--Hb_000742_040 Hb_002999_020--Hb_000742_040 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_016734_110 Hb_016734_110 Hb_002999_020--Hb_016734_110 Hb_000802_040 Hb_000802_040 Hb_001416_120--Hb_000802_040 Hb_001416_120--Hb_000742_040 Hb_001416_120--Hb_124677_070 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_016734_110 Hb_000742_040--Hb_000802_040 Hb_000731_180 Hb_000731_180 Hb_090210_010--Hb_000731_180 Hb_007292_060 Hb_007292_060 Hb_090210_010--Hb_007292_060 Hb_002326_090 Hb_002326_090 Hb_090210_010--Hb_002326_090 Hb_090210_010--Hb_002999_020 Hb_001775_140 Hb_001775_140 Hb_000934_120--Hb_001775_140 Hb_016911_010 Hb_016911_010 Hb_000934_120--Hb_016911_010 Hb_051212_020 Hb_051212_020 Hb_000934_120--Hb_051212_020 Hb_009062_020 Hb_009062_020 Hb_000934_120--Hb_009062_020 Hb_003197_050 Hb_003197_050 Hb_000934_120--Hb_003197_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.121065 1.6535 6.64455 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0134368 0.41521

CAGE analysis