Hb_000796_130

Information

Type -
Description -
Location Contig796: 96179-98441
Sequence    

Annotation

kegg
ID rcu:RCOM_1345910
description hypothetical protein
nr
ID XP_012082948.1
description PREDICTED: patatin-like protein 2 [Jatropha curcas]
swissprot
ID O48723
description Patatin-like protein 2 OS=Arabidopsis thaliana GN=PLP2 PE=1 SV=1
trembl
ID A0A067JWQ0
description Patatin OS=Jatropha curcas GN=JCGZ_14063 PE=3 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58552: 96217-96613 , PASA_asmbl_58553: 98021-98467
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_130 0.0 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
2 Hb_000062_210 0.1997742787 - - PREDICTED: BAHD acyltransferase At5g47980-like [Pyrus x bretschneideri]
3 Hb_030627_010 0.2109566604 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]
4 Hb_007765_050 0.2259974976 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Jatropha curcas]
5 Hb_000525_070 0.2277490686 - - PREDICTED: WAT1-related protein At5g40240-like [Jatropha curcas]
6 Hb_002085_040 0.2382697855 - - structural constituent of cell wall, putative [Ricinus communis]
7 Hb_000763_040 0.2409865019 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_000175_640 0.2443398612 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
9 Hb_003026_040 0.2501908417 - - Uncharacterized protein TCM_007861 [Theobroma cacao]
10 Hb_011282_040 0.2519433493 - - Sec14 cytosolic factor, putative [Ricinus communis]
11 Hb_000128_030 0.2524666165 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000184_010 0.2591771116 - - mutt domain protein, putative [Ricinus communis]
13 Hb_177281_010 0.2661693797 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
14 Hb_000692_090 0.2667819756 - - -
15 Hb_004048_080 0.2677503251 - - hypothetical protein POPTR_0001s40360g [Populus trichocarpa]
16 Hb_002641_020 0.268047983 - - 3'-5' exonuclease, putative [Ricinus communis]
17 Hb_003018_170 0.269488608 - - hypothetical protein POPTR_0005s11660g [Populus trichocarpa]
18 Hb_000206_170 0.2696933463 - - hypothetical protein JCGZ_25514 [Jatropha curcas]
19 Hb_000915_250 0.2737609681 - - chloroplast latex aldolase-like protein [Manihot esculenta]
20 Hb_011519_050 0.2747501347 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]

Gene co-expression network

sample Hb_000796_130 Hb_000796_130 Hb_000062_210 Hb_000062_210 Hb_000796_130--Hb_000062_210 Hb_030627_010 Hb_030627_010 Hb_000796_130--Hb_030627_010 Hb_007765_050 Hb_007765_050 Hb_000796_130--Hb_007765_050 Hb_000525_070 Hb_000525_070 Hb_000796_130--Hb_000525_070 Hb_002085_040 Hb_002085_040 Hb_000796_130--Hb_002085_040 Hb_000763_040 Hb_000763_040 Hb_000796_130--Hb_000763_040 Hb_000062_210--Hb_030627_010 Hb_000128_030 Hb_000128_030 Hb_000062_210--Hb_000128_030 Hb_000062_210--Hb_000525_070 Hb_003026_040 Hb_003026_040 Hb_000062_210--Hb_003026_040 Hb_000062_210--Hb_000763_040 Hb_030627_010--Hb_000128_030 Hb_002183_080 Hb_002183_080 Hb_030627_010--Hb_002183_080 Hb_003540_100 Hb_003540_100 Hb_030627_010--Hb_003540_100 Hb_007558_130 Hb_007558_130 Hb_030627_010--Hb_007558_130 Hb_001584_210 Hb_001584_210 Hb_007765_050--Hb_001584_210 Hb_000898_090 Hb_000898_090 Hb_007765_050--Hb_000898_090 Hb_002003_130 Hb_002003_130 Hb_007765_050--Hb_002003_130 Hb_003849_050 Hb_003849_050 Hb_007765_050--Hb_003849_050 Hb_002477_020 Hb_002477_020 Hb_007765_050--Hb_002477_020 Hb_001195_290 Hb_001195_290 Hb_007765_050--Hb_001195_290 Hb_000525_070--Hb_003026_040 Hb_011282_040 Hb_011282_040 Hb_000525_070--Hb_011282_040 Hb_000525_070--Hb_000763_040 Hb_001969_100 Hb_001969_100 Hb_000525_070--Hb_001969_100 Hb_000915_250 Hb_000915_250 Hb_000525_070--Hb_000915_250 Hb_001268_170 Hb_001268_170 Hb_000525_070--Hb_001268_170 Hb_002085_040--Hb_000062_210 Hb_001623_120 Hb_001623_120 Hb_002085_040--Hb_001623_120 Hb_002085_040--Hb_030627_010 Hb_000668_130 Hb_000668_130 Hb_002085_040--Hb_000668_130 Hb_001951_160 Hb_001951_160 Hb_002085_040--Hb_001951_160 Hb_000763_040--Hb_000915_250 Hb_000763_040--Hb_003026_040 Hb_004525_010 Hb_004525_010 Hb_000763_040--Hb_004525_010 Hb_000334_290 Hb_000334_290 Hb_000763_040--Hb_000334_290 Hb_000254_020 Hb_000254_020 Hb_000763_040--Hb_000254_020 Hb_000985_150 Hb_000985_150 Hb_000763_040--Hb_000985_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.107828 0.0401767 0.0216449 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0416176 0 0 0.169846

CAGE analysis