Hb_000796_150

Information

Type -
Description -
Location Contig796: 101926-103391
Sequence    

Annotation

kegg
ID pop:POPTR_0014s11280g
description POPTRDRAFT_572580; hypothetical protein
nr
ID XP_011040841.1
description PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9I9F8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s11280g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58554: 101956-103288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_150 0.0 - - PREDICTED: uncharacterized protein LOC105136996 isoform X1 [Populus euphratica]
2 Hb_185830_060 0.0891784095 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
3 Hb_000072_300 0.0904358994 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
4 Hb_000359_290 0.0907572445 - - Triose phosphate/phosphate translocator, non-green plastid, chloroplast precursor, putative [Ricinus communis]
5 Hb_000665_180 0.0960327308 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
6 Hb_011671_260 0.0960825761 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
7 Hb_000140_340 0.0974503377 - - PREDICTED: protein ABIL1 [Jatropha curcas]
8 Hb_000069_640 0.0991464392 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
9 Hb_000197_020 0.099521359 - - PREDICTED: protein RER1A [Jatropha curcas]
10 Hb_000638_070 0.1006371126 - - PREDICTED: protein trichome birefringence-like 14 [Jatropha curcas]
11 Hb_004754_050 0.1039274461 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
12 Hb_000395_110 0.1039967368 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
13 Hb_000152_600 0.1046898942 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
14 Hb_005993_010 0.105737901 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
15 Hb_010672_020 0.1060952666 - - PREDICTED: ATP synthase gamma chain, chloroplastic-like [Jatropha curcas]
16 Hb_156850_100 0.1067655788 - - hypothetical protein CICLE_v10001788mg [Citrus clementina]
17 Hb_000270_480 0.1081216158 - - Mannose-1-phosphate guanyltransferase alpha [Gossypium arboreum]
18 Hb_000962_070 0.1091526562 - - PREDICTED: probable plastid-lipid-associated protein 13, chloroplastic isoform X2 [Jatropha curcas]
19 Hb_002740_080 0.1101119573 - - flap endonuclease-1, putative [Ricinus communis]
20 Hb_011310_110 0.1103651215 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_150 Hb_000796_150 Hb_185830_060 Hb_185830_060 Hb_000796_150--Hb_185830_060 Hb_000072_300 Hb_000072_300 Hb_000796_150--Hb_000072_300 Hb_000359_290 Hb_000359_290 Hb_000796_150--Hb_000359_290 Hb_000665_180 Hb_000665_180 Hb_000796_150--Hb_000665_180 Hb_011671_260 Hb_011671_260 Hb_000796_150--Hb_011671_260 Hb_000140_340 Hb_000140_340 Hb_000796_150--Hb_000140_340 Hb_002193_060 Hb_002193_060 Hb_185830_060--Hb_002193_060 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_185830_060--Hb_000665_180 Hb_005701_120 Hb_005701_120 Hb_185830_060--Hb_005701_120 Hb_003540_050 Hb_003540_050 Hb_000072_300--Hb_003540_050 Hb_002740_080 Hb_002740_080 Hb_000072_300--Hb_002740_080 Hb_000072_300--Hb_000359_290 Hb_002686_080 Hb_002686_080 Hb_000072_300--Hb_002686_080 Hb_005064_010 Hb_005064_010 Hb_000072_300--Hb_005064_010 Hb_000152_600 Hb_000152_600 Hb_000072_300--Hb_000152_600 Hb_000359_290--Hb_000140_340 Hb_001087_030 Hb_001087_030 Hb_000359_290--Hb_001087_030 Hb_004754_050 Hb_004754_050 Hb_000359_290--Hb_004754_050 Hb_011310_110 Hb_011310_110 Hb_000359_290--Hb_011310_110 Hb_000008_340 Hb_000008_340 Hb_000665_180--Hb_000008_340 Hb_000665_180--Hb_000395_110 Hb_000638_070 Hb_000638_070 Hb_000665_180--Hb_000638_070 Hb_002955_020 Hb_002955_020 Hb_000665_180--Hb_002955_020 Hb_000665_180--Hb_002193_060 Hb_003266_030 Hb_003266_030 Hb_011671_260--Hb_003266_030 Hb_002631_240 Hb_002631_240 Hb_011671_260--Hb_002631_240 Hb_073973_090 Hb_073973_090 Hb_011671_260--Hb_073973_090 Hb_000167_110 Hb_000167_110 Hb_011671_260--Hb_000167_110 Hb_006907_060 Hb_006907_060 Hb_011671_260--Hb_006907_060 Hb_004965_110 Hb_004965_110 Hb_011671_260--Hb_004965_110 Hb_001876_040 Hb_001876_040 Hb_000140_340--Hb_001876_040 Hb_000189_480 Hb_000189_480 Hb_000140_340--Hb_000189_480 Hb_022693_130 Hb_022693_130 Hb_000140_340--Hb_022693_130 Hb_000212_120 Hb_000212_120 Hb_000140_340--Hb_000212_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2771 13.6482 33.3872 47.3606 10.2443 11.2005
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8184 15.1137 14.4866 10.082 29.9195

CAGE analysis