Hb_000796_170

Information

Type -
Description -
Location Contig796: 112218-118652
Sequence    

Annotation

kegg
ID rcu:RCOM_1346070
description long-chain-fatty-acid CoA ligase, putative (EC:6.2.1.3)
nr
ID XP_012082936.1
description PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
swissprot
ID O22898
description Long chain acyl-CoA synthetase 1 OS=Arabidopsis thaliana GN=LACS1 PE=2 SV=1
trembl
ID A0A067JZT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14059 PE=4 SV=1
Gene Ontology
ID GO:0004467
description long chain acyl- synthetase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58556: 112367-118658
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_170 0.0 - - PREDICTED: long chain acyl-CoA synthetase 1 [Jatropha curcas]
2 Hb_005000_130 0.1443868028 - - PREDICTED: beta-galactosidase-like [Jatropha curcas]
3 Hb_000371_100 0.1705994344 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor [Hevea brasiliensis]
4 Hb_000172_380 0.1772209796 - - small heat-shock protein, putative [Ricinus communis]
5 Hb_001435_020 0.2013247673 - - hypothetical protein JCGZ_22466 [Jatropha curcas]
6 Hb_007722_010 0.2031761687 - - PREDICTED: kinesin light chain [Jatropha curcas]
7 Hb_000135_030 0.2054363184 - - PREDICTED: uncharacterized protein LOC105634729 isoform X1 [Jatropha curcas]
8 Hb_005725_260 0.2059615761 - - squalene monooxygenase [Jatropha curcas]
9 Hb_000189_480 0.2077940053 - - PREDICTED: uncharacterized protein LOC105111904 isoform X2 [Populus euphratica]
10 Hb_000609_100 0.2092227644 - - Thylakoid lumenal 16.5 kDa protein, chloroplast precursor, putative [Ricinus communis]
11 Hb_001102_020 0.209501915 - - solanesyl diphosphate synthase [Hevea brasiliensis]
12 Hb_000920_030 0.2107522141 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
13 Hb_000028_110 0.2131306171 - - PREDICTED: uncharacterized protein LOC105645305 [Jatropha curcas]
14 Hb_000300_660 0.2135646038 - - unknown [Glycine max]
15 Hb_000333_080 0.217921489 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
16 Hb_005672_020 0.2197565967 - - PREDICTED: 50S ribosomal protein L6, chloroplastic [Jatropha curcas]
17 Hb_003647_020 0.2200029304 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
18 Hb_114310_110 0.2205128841 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
19 Hb_003935_060 0.2231471821 - - PREDICTED: very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 [Jatropha curcas]
20 Hb_113818_010 0.2232234306 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]

Gene co-expression network

sample Hb_000796_170 Hb_000796_170 Hb_005000_130 Hb_005000_130 Hb_000796_170--Hb_005000_130 Hb_000371_100 Hb_000371_100 Hb_000796_170--Hb_000371_100 Hb_000172_380 Hb_000172_380 Hb_000796_170--Hb_000172_380 Hb_001435_020 Hb_001435_020 Hb_000796_170--Hb_001435_020 Hb_007722_010 Hb_007722_010 Hb_000796_170--Hb_007722_010 Hb_000135_030 Hb_000135_030 Hb_000796_170--Hb_000135_030 Hb_000300_660 Hb_000300_660 Hb_005000_130--Hb_000300_660 Hb_000983_040 Hb_000983_040 Hb_005000_130--Hb_000983_040 Hb_005000_130--Hb_000371_100 Hb_054132_010 Hb_054132_010 Hb_005000_130--Hb_054132_010 Hb_005000_130--Hb_001435_020 Hb_005672_020 Hb_005672_020 Hb_000371_100--Hb_005672_020 Hb_001504_030 Hb_001504_030 Hb_000371_100--Hb_001504_030 Hb_001828_040 Hb_001828_040 Hb_000371_100--Hb_001828_040 Hb_000028_110 Hb_000028_110 Hb_000371_100--Hb_000028_110 Hb_002496_020 Hb_002496_020 Hb_000371_100--Hb_002496_020 Hb_001314_080 Hb_001314_080 Hb_000371_100--Hb_001314_080 Hb_000059_270 Hb_000059_270 Hb_000172_380--Hb_000059_270 Hb_004735_020 Hb_004735_020 Hb_000172_380--Hb_004735_020 Hb_001080_070 Hb_001080_070 Hb_000172_380--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000172_380--Hb_000114_150 Hb_001220_050 Hb_001220_050 Hb_000172_380--Hb_001220_050 Hb_009020_040 Hb_009020_040 Hb_000172_380--Hb_009020_040 Hb_000622_240 Hb_000622_240 Hb_001435_020--Hb_000622_240 Hb_003349_030 Hb_003349_030 Hb_001435_020--Hb_003349_030 Hb_001712_020 Hb_001712_020 Hb_001435_020--Hb_001712_020 Hb_001790_030 Hb_001790_030 Hb_001435_020--Hb_001790_030 Hb_005846_030 Hb_005846_030 Hb_001435_020--Hb_005846_030 Hb_000390_110 Hb_000390_110 Hb_001435_020--Hb_000390_110 Hb_000365_090 Hb_000365_090 Hb_007722_010--Hb_000365_090 Hb_004375_130 Hb_004375_130 Hb_007722_010--Hb_004375_130 Hb_000554_010 Hb_000554_010 Hb_007722_010--Hb_000554_010 Hb_004007_160 Hb_004007_160 Hb_007722_010--Hb_004007_160 Hb_182516_010 Hb_182516_010 Hb_007722_010--Hb_182516_010 Hb_095595_010 Hb_095595_010 Hb_007722_010--Hb_095595_010 Hb_114310_110 Hb_114310_110 Hb_000135_030--Hb_114310_110 Hb_004398_030 Hb_004398_030 Hb_000135_030--Hb_004398_030 Hb_011486_040 Hb_011486_040 Hb_000135_030--Hb_011486_040 Hb_007811_030 Hb_007811_030 Hb_000135_030--Hb_007811_030 Hb_000135_030--Hb_002496_020 Hb_000984_270 Hb_000984_270 Hb_000135_030--Hb_000984_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.1101 5.51442 43.8121 91.3112 36.5121 36.1397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.8605 24.0603 21.655 4.19676 165.233

CAGE analysis