Hb_000796_180

Information

Type -
Description -
Location Contig796: 119715-121370
Sequence    

Annotation

kegg
ID vvi:104879800
description pentatricopeptide repeat-containing protein At4g02750-like
nr
ID XP_010652281.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
swissprot
ID Q9M4P3
description Pentatricopeptide repeat-containing protein At4g16835, mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
trembl
ID K7MZM7
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein at4g02750-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58557: 119882-120212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_180 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
2 Hb_000174_220 0.0747532379 - - cohesin subunit rad21, putative [Ricinus communis]
3 Hb_000103_100 0.0751110933 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
4 Hb_002636_100 0.0758716426 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
5 Hb_000139_090 0.0790352127 - - PREDICTED: protein TIME FOR COFFEE isoform X3 [Jatropha curcas]
6 Hb_000092_020 0.089818071 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
7 Hb_000169_130 0.0909619401 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
8 Hb_010738_010 0.0914046179 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_002235_300 0.0928171871 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
10 Hb_003785_040 0.0945306263 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
11 Hb_000201_100 0.0949662152 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
12 Hb_045793_010 0.0953015957 - - PREDICTED: putative disease resistance protein RGA3 [Pyrus x bretschneideri]
13 Hb_008695_110 0.0968756317 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
14 Hb_000920_060 0.0971290275 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
15 Hb_001728_050 0.098006475 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
16 Hb_000977_120 0.0986646098 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
17 Hb_002411_030 0.0992223634 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
18 Hb_002263_040 0.0996150021 - - carbon catabolite repressor protein, putative [Ricinus communis]
19 Hb_000395_130 0.1002827622 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
20 Hb_032202_110 0.1016291179 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_000796_180 Hb_000796_180 Hb_000174_220 Hb_000174_220 Hb_000796_180--Hb_000174_220 Hb_000103_100 Hb_000103_100 Hb_000796_180--Hb_000103_100 Hb_002636_100 Hb_002636_100 Hb_000796_180--Hb_002636_100 Hb_000139_090 Hb_000139_090 Hb_000796_180--Hb_000139_090 Hb_000092_020 Hb_000092_020 Hb_000796_180--Hb_000092_020 Hb_000169_130 Hb_000169_130 Hb_000796_180--Hb_000169_130 Hb_000174_220--Hb_000139_090 Hb_015807_070 Hb_015807_070 Hb_000174_220--Hb_015807_070 Hb_002235_300 Hb_002235_300 Hb_000174_220--Hb_002235_300 Hb_045793_010 Hb_045793_010 Hb_000174_220--Hb_045793_010 Hb_003785_040 Hb_003785_040 Hb_000174_220--Hb_003785_040 Hb_001247_070 Hb_001247_070 Hb_000174_220--Hb_001247_070 Hb_003633_070 Hb_003633_070 Hb_000103_100--Hb_003633_070 Hb_008695_110 Hb_008695_110 Hb_000103_100--Hb_008695_110 Hb_003117_020 Hb_003117_020 Hb_000103_100--Hb_003117_020 Hb_010738_010 Hb_010738_010 Hb_000103_100--Hb_010738_010 Hb_001767_140 Hb_001767_140 Hb_000103_100--Hb_001767_140 Hb_002263_040 Hb_002263_040 Hb_002636_100--Hb_002263_040 Hb_008775_040 Hb_008775_040 Hb_002636_100--Hb_008775_040 Hb_000264_320 Hb_000264_320 Hb_002636_100--Hb_000264_320 Hb_002798_070 Hb_002798_070 Hb_002636_100--Hb_002798_070 Hb_000322_150 Hb_000322_150 Hb_002636_100--Hb_000322_150 Hb_000139_090--Hb_001247_070 Hb_002524_040 Hb_002524_040 Hb_000139_090--Hb_002524_040 Hb_007576_120 Hb_007576_120 Hb_000139_090--Hb_007576_120 Hb_000002_040 Hb_000002_040 Hb_000139_090--Hb_000002_040 Hb_000139_090--Hb_015807_070 Hb_000395_130 Hb_000395_130 Hb_000092_020--Hb_000395_130 Hb_001080_230 Hb_001080_230 Hb_000092_020--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000092_020--Hb_000003_190 Hb_000092_020--Hb_003785_040 Hb_000574_540 Hb_000574_540 Hb_000092_020--Hb_000574_540 Hb_011491_010 Hb_011491_010 Hb_000092_020--Hb_011491_010 Hb_004480_040 Hb_004480_040 Hb_000169_130--Hb_004480_040 Hb_000169_130--Hb_010738_010 Hb_000169_130--Hb_003785_040 Hb_000441_070 Hb_000441_070 Hb_000169_130--Hb_000441_070 Hb_065525_060 Hb_065525_060 Hb_000169_130--Hb_065525_060 Hb_000169_130--Hb_003633_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11377 1.40984 0.699083 0.256292 0.794659 1.08053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.529905 0.746052 0.786093 0.542345 0.737352

CAGE analysis