Hb_000796_210

Information

Type -
Description -
Location Contig796: 136311-139572
Sequence    

Annotation

kegg
ID rcu:RCOM_1346300
description hypothetical protein
nr
ID XP_002515247.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1346300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58567: 136256-136736 , PASA_asmbl_58568: 138365-138869 , PASA_asmbl_58569: 139120-139710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003428_030 0.070151464 - - tRNA, putative [Ricinus communis]
3 Hb_112798_020 0.0733368032 - - dnajc14 protein, putative [Ricinus communis]
4 Hb_000032_270 0.0755026697 - - PREDICTED: F-box/LRR-repeat protein 13 [Jatropha curcas]
5 Hb_000610_050 0.0775035806 - - skp1, putative [Ricinus communis]
6 Hb_007576_080 0.0779191326 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
7 Hb_002245_030 0.0788852596 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_027472_040 0.0789687326 - - SKP1 [Hevea brasiliensis]
9 Hb_010712_030 0.0797528971 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000220_040 0.0815299641 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002585_040 0.0824435113 - - PREDICTED: cell division control protein 48 homolog B [Jatropha curcas]
12 Hb_005048_130 0.0832523976 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
13 Hb_003126_050 0.0863095047 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
14 Hb_000640_240 0.0865374461 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
15 Hb_007423_040 0.0871193658 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
16 Hb_024071_020 0.0871814438 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_002320_040 0.0877303215 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
18 Hb_028285_010 0.0887390653 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
19 Hb_000853_350 0.089125959 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
20 Hb_003125_200 0.0897731112 - - PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_210 Hb_000796_210 Hb_003428_030 Hb_003428_030 Hb_000796_210--Hb_003428_030 Hb_112798_020 Hb_112798_020 Hb_000796_210--Hb_112798_020 Hb_000032_270 Hb_000032_270 Hb_000796_210--Hb_000032_270 Hb_000610_050 Hb_000610_050 Hb_000796_210--Hb_000610_050 Hb_007576_080 Hb_007576_080 Hb_000796_210--Hb_007576_080 Hb_002245_030 Hb_002245_030 Hb_000796_210--Hb_002245_030 Hb_007691_030 Hb_007691_030 Hb_003428_030--Hb_007691_030 Hb_003525_010 Hb_003525_010 Hb_003428_030--Hb_003525_010 Hb_000093_160 Hb_000093_160 Hb_003428_030--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_003428_030--Hb_000038_170 Hb_003125_120 Hb_003125_120 Hb_003428_030--Hb_003125_120 Hb_003428_030--Hb_000032_270 Hb_002248_080 Hb_002248_080 Hb_112798_020--Hb_002248_080 Hb_004970_090 Hb_004970_090 Hb_112798_020--Hb_004970_090 Hb_017491_030 Hb_017491_030 Hb_112798_020--Hb_017491_030 Hb_000529_020 Hb_000529_020 Hb_112798_020--Hb_000529_020 Hb_000256_190 Hb_000256_190 Hb_112798_020--Hb_000256_190 Hb_000680_160 Hb_000680_160 Hb_000032_270--Hb_000680_160 Hb_003057_100 Hb_003057_100 Hb_000032_270--Hb_003057_100 Hb_005846_040 Hb_005846_040 Hb_000032_270--Hb_005846_040 Hb_001758_100 Hb_001758_100 Hb_000032_270--Hb_001758_100 Hb_000032_270--Hb_007691_030 Hb_024071_020 Hb_024071_020 Hb_000610_050--Hb_024071_020 Hb_027472_040 Hb_027472_040 Hb_000610_050--Hb_027472_040 Hb_002893_050 Hb_002893_050 Hb_000610_050--Hb_002893_050 Hb_007875_030 Hb_007875_030 Hb_000610_050--Hb_007875_030 Hb_000342_100 Hb_000342_100 Hb_000610_050--Hb_000342_100 Hb_014109_040 Hb_014109_040 Hb_007576_080--Hb_014109_040 Hb_003780_030 Hb_003780_030 Hb_007576_080--Hb_003780_030 Hb_000589_120 Hb_000589_120 Hb_007576_080--Hb_000589_120 Hb_007423_040 Hb_007423_040 Hb_007576_080--Hb_007423_040 Hb_002652_030 Hb_002652_030 Hb_007576_080--Hb_002652_030 Hb_002585_040 Hb_002585_040 Hb_007576_080--Hb_002585_040 Hb_014720_120 Hb_014720_120 Hb_002245_030--Hb_014720_120 Hb_000220_010 Hb_000220_010 Hb_002245_030--Hb_000220_010 Hb_005730_120 Hb_005730_120 Hb_002245_030--Hb_005730_120 Hb_002601_110 Hb_002601_110 Hb_002245_030--Hb_002601_110 Hb_002245_030--Hb_007423_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.85411 6.76411 5.12739 6.90158 9.40528 7.02026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55342 10.5251 5.07128 5.84801 2.33889

CAGE analysis