Hb_000796_220

Information

Type -
Description -
Location Contig796: 143261-147045
Sequence    

Annotation

kegg
ID rcu:RCOM_1346320
description nucleic acid binding protein, putative
nr
ID XP_012082931.1
description PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K7Q2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14056 PE=4 SV=1
Gene Ontology
ID GO:0003676
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58571: 144233-145547
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_220 0.0 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
2 Hb_000808_230 0.0630712408 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
3 Hb_004109_090 0.066995158 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000170_210 0.0690744191 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_001675_180 0.0761086403 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
6 Hb_085781_010 0.0794681493 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
7 Hb_000832_020 0.0812452711 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
8 Hb_006400_060 0.0814241026 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1 [Jatropha curcas]
9 Hb_002876_110 0.0821240972 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003728_080 0.082720849 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
11 Hb_004221_020 0.0835038176 - - protein binding protein, putative [Ricinus communis]
12 Hb_011139_030 0.0837827763 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
13 Hb_001269_550 0.0843305234 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
14 Hb_002496_030 0.085033835 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
15 Hb_028089_010 0.0861407322 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
16 Hb_007426_030 0.0863275865 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]
17 Hb_044728_010 0.0870383222 - - -
18 Hb_000707_050 0.0874288459 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
19 Hb_003175_010 0.0874458697 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
20 Hb_048937_040 0.087705871 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000796_220 Hb_000796_220 Hb_000808_230 Hb_000808_230 Hb_000796_220--Hb_000808_230 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_000170_210 Hb_000170_210 Hb_000796_220--Hb_000170_210 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000796_220--Hb_085781_010 Hb_000832_020 Hb_000832_020 Hb_000796_220--Hb_000832_020 Hb_006400_060 Hb_006400_060 Hb_000808_230--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000808_230--Hb_007426_030 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_001545_120 Hb_001545_120 Hb_000808_230--Hb_001545_120 Hb_000808_230--Hb_000170_210 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060 Hb_000170_210--Hb_003175_010 Hb_002044_080 Hb_002044_080 Hb_000170_210--Hb_002044_080 Hb_000395_170 Hb_000395_170 Hb_000170_210--Hb_000395_170 Hb_000926_280 Hb_000926_280 Hb_000170_210--Hb_000926_280 Hb_001675_180--Hb_044728_010 Hb_000072_220 Hb_000072_220 Hb_001675_180--Hb_000072_220 Hb_000010_330 Hb_000010_330 Hb_001675_180--Hb_000010_330 Hb_001776_140 Hb_001776_140 Hb_001675_180--Hb_001776_140 Hb_008643_210 Hb_008643_210 Hb_001675_180--Hb_008643_210 Hb_000165_250 Hb_000165_250 Hb_001675_180--Hb_000165_250 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007632_220 Hb_007632_220 Hb_085781_010--Hb_007632_220 Hb_007951_050 Hb_007951_050 Hb_085781_010--Hb_007951_050 Hb_009048_040 Hb_009048_040 Hb_085781_010--Hb_009048_040 Hb_011673_030 Hb_011673_030 Hb_085781_010--Hb_011673_030 Hb_002217_300 Hb_002217_300 Hb_000832_020--Hb_002217_300 Hb_000032_100 Hb_000032_100 Hb_000832_020--Hb_000032_100 Hb_000707_050 Hb_000707_050 Hb_000832_020--Hb_000707_050 Hb_000739_310 Hb_000739_310 Hb_000832_020--Hb_000739_310 Hb_002311_040 Hb_002311_040 Hb_000832_020--Hb_002311_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0301 4.92575 5.77853 4.92135 14.2613 14.7852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93466 10.5658 16.3108 8.44452 8.0393

CAGE analysis