Hb_000796_240

Information

Type -
Description -
Location Contig796: 156979-164037
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58572: 157014-159536 , PASA_asmbl_58573: 159537-159883 , PASA_asmbl_58574: 161535-162545 , PASA_asmbl_58575: 161951-162280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_240 0.0 - - -
2 Hb_000008_420 0.0925249657 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
3 Hb_012539_110 0.1048192373 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
4 Hb_000088_270 0.1172675758 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
5 Hb_089140_040 0.1233818829 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
6 Hb_007423_050 0.1240534375 - - PREDICTED: cysteine-rich receptor-like protein kinase 3 [Jatropha curcas]
7 Hb_006588_060 0.1253839669 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
8 Hb_001008_100 0.1270406489 - - JHL25H03.10 [Jatropha curcas]
9 Hb_000690_150 0.127653677 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
10 Hb_000676_260 0.1276749872 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
11 Hb_001268_310 0.1293521147 - - -
12 Hb_025336_020 0.134161339 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
13 Hb_007382_120 0.1356978938 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
14 Hb_016734_060 0.1361299224 - - PREDICTED: nucleolar protein 6 [Jatropha curcas]
15 Hb_002016_090 0.1374837253 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
16 Hb_000856_300 0.13836615 - - PREDICTED: uncharacterized protein LOC105640498 [Jatropha curcas]
17 Hb_000617_190 0.139043196 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
18 Hb_002461_060 0.1390455613 - - PREDICTED: SWR1-complex protein 4 isoform X3 [Jatropha curcas]
19 Hb_000926_150 0.1410198292 - - PREDICTED: splicing factor, suppressor of white-apricot homolog isoform X1 [Jatropha curcas]
20 Hb_001031_090 0.1418781797 - - PREDICTED: translational activator GCN1 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_240 Hb_000796_240 Hb_000008_420 Hb_000008_420 Hb_000796_240--Hb_000008_420 Hb_012539_110 Hb_012539_110 Hb_000796_240--Hb_012539_110 Hb_000088_270 Hb_000088_270 Hb_000796_240--Hb_000088_270 Hb_089140_040 Hb_089140_040 Hb_000796_240--Hb_089140_040 Hb_007423_050 Hb_007423_050 Hb_000796_240--Hb_007423_050 Hb_006588_060 Hb_006588_060 Hb_000796_240--Hb_006588_060 Hb_000008_420--Hb_000088_270 Hb_000008_420--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_000617_190 Hb_000617_190 Hb_012539_110--Hb_000617_190 Hb_000856_300 Hb_000856_300 Hb_012539_110--Hb_000856_300 Hb_004994_090 Hb_004994_090 Hb_012539_110--Hb_004994_090 Hb_008948_140 Hb_008948_140 Hb_012539_110--Hb_008948_140 Hb_001031_090 Hb_001031_090 Hb_012539_110--Hb_001031_090 Hb_001019_050 Hb_001019_050 Hb_000088_270--Hb_001019_050 Hb_011224_160 Hb_011224_160 Hb_000088_270--Hb_011224_160 Hb_000347_450 Hb_000347_450 Hb_000088_270--Hb_000347_450 Hb_025336_020 Hb_025336_020 Hb_000088_270--Hb_025336_020 Hb_003777_290 Hb_003777_290 Hb_000088_270--Hb_003777_290 Hb_006468_010 Hb_006468_010 Hb_089140_040--Hb_006468_010 Hb_089140_040--Hb_012092_050 Hb_005489_140 Hb_005489_140 Hb_089140_040--Hb_005489_140 Hb_005215_020 Hb_005215_020 Hb_089140_040--Hb_005215_020 Hb_089140_040--Hb_000008_420 Hb_015026_130 Hb_015026_130 Hb_089140_040--Hb_015026_130 Hb_007423_050--Hb_025336_020 Hb_011671_270 Hb_011671_270 Hb_007423_050--Hb_011671_270 Hb_006637_070 Hb_006637_070 Hb_007423_050--Hb_006637_070 Hb_000690_150 Hb_000690_150 Hb_007423_050--Hb_000690_150 Hb_007423_050--Hb_000088_270 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_006588_060--Hb_012092_050 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90075 4.33463 2.80952 2.39404 1.23781 1.36942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.07703 3.00849 0.281417 4.00605 2.23436

CAGE analysis