Hb_000796_250

Information

Type transcription factor
Description TF Family: WRKY
Location Contig796: 165277-167299
Sequence    

Annotation

kegg
ID rcu:RCOM_1346340
description WRKY transcription factor, putative
nr
ID ADF45433.1
description WRKY1 [Hevea brasiliensis]
swissprot
ID O22900
description Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1
trembl
ID G8Z9V5
description WRKY1 OS=Hevea brasiliensis GN=WRKY1 PE=2 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58576: 165456-167207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000796_250 0.0 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
2 Hb_138585_110 0.1356977161 - - -
3 Hb_001117_070 0.1468501757 - - 30S ribosomal protein S19, putative [Ricinus communis]
4 Hb_000318_200 0.1501582611 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
5 Hb_000260_290 0.1582907011 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
6 Hb_001049_020 0.1585511074 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004230_040 0.1657038219 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001902_190 0.1670419347 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
9 Hb_001486_030 0.1688387668 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003442_070 0.171391477 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 [Jatropha curcas]
11 Hb_002236_050 0.1749383502 - - -
12 Hb_001433_180 0.1836463035 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
13 Hb_031862_040 0.1840227861 - - purine transporter, putative [Ricinus communis]
14 Hb_006111_080 0.1868257607 - - hypothetical protein JCGZ_18070 [Jatropha curcas]
15 Hb_165669_010 0.1868342336 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X1 [Jatropha curcas]
16 Hb_021888_050 0.1924445714 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
17 Hb_008147_070 0.1931731958 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
18 Hb_002374_380 0.1939896695 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
19 Hb_009510_040 0.193993377 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
20 Hb_011861_120 0.194526524 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000796_250 Hb_000796_250 Hb_138585_110 Hb_138585_110 Hb_000796_250--Hb_138585_110 Hb_001117_070 Hb_001117_070 Hb_000796_250--Hb_001117_070 Hb_000318_200 Hb_000318_200 Hb_000796_250--Hb_000318_200 Hb_000260_290 Hb_000260_290 Hb_000796_250--Hb_000260_290 Hb_001049_020 Hb_001049_020 Hb_000796_250--Hb_001049_020 Hb_004230_040 Hb_004230_040 Hb_000796_250--Hb_004230_040 Hb_001529_050 Hb_001529_050 Hb_138585_110--Hb_001529_050 Hb_138585_110--Hb_004230_040 Hb_001507_100 Hb_001507_100 Hb_138585_110--Hb_001507_100 Hb_001104_240 Hb_001104_240 Hb_138585_110--Hb_001104_240 Hb_010334_020 Hb_010334_020 Hb_138585_110--Hb_010334_020 Hb_000243_140 Hb_000243_140 Hb_001117_070--Hb_000243_140 Hb_009510_040 Hb_009510_040 Hb_001117_070--Hb_009510_040 Hb_001902_190 Hb_001902_190 Hb_001117_070--Hb_001902_190 Hb_000640_300 Hb_000640_300 Hb_001117_070--Hb_000640_300 Hb_000432_040 Hb_000432_040 Hb_001117_070--Hb_000432_040 Hb_000417_320 Hb_000417_320 Hb_000318_200--Hb_000417_320 Hb_000120_390 Hb_000120_390 Hb_000318_200--Hb_000120_390 Hb_027380_200 Hb_027380_200 Hb_000318_200--Hb_027380_200 Hb_008147_070 Hb_008147_070 Hb_000318_200--Hb_008147_070 Hb_119494_010 Hb_119494_010 Hb_000318_200--Hb_119494_010 Hb_015690_020 Hb_015690_020 Hb_000260_290--Hb_015690_020 Hb_001433_180 Hb_001433_180 Hb_000260_290--Hb_001433_180 Hb_001565_110 Hb_001565_110 Hb_000260_290--Hb_001565_110 Hb_003052_220 Hb_003052_220 Hb_000260_290--Hb_003052_220 Hb_031862_040 Hb_031862_040 Hb_000260_290--Hb_031862_040 Hb_004631_210 Hb_004631_210 Hb_001049_020--Hb_004631_210 Hb_001341_100 Hb_001341_100 Hb_001049_020--Hb_001341_100 Hb_003442_070 Hb_003442_070 Hb_001049_020--Hb_003442_070 Hb_165669_010 Hb_165669_010 Hb_001049_020--Hb_165669_010 Hb_002577_010 Hb_002577_010 Hb_001049_020--Hb_002577_010 Hb_001049_020--Hb_031862_040 Hb_002028_220 Hb_002028_220 Hb_004230_040--Hb_002028_220 Hb_000390_150 Hb_000390_150 Hb_004230_040--Hb_000390_150 Hb_000923_050 Hb_000923_050 Hb_004230_040--Hb_000923_050 Hb_004230_040--Hb_001902_190 Hb_028872_060 Hb_028872_060 Hb_004230_040--Hb_028872_060 Hb_002400_400 Hb_002400_400 Hb_004230_040--Hb_002400_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.20753 19.8624 3.12302 6.23522 1.99343 4.81875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3652 16.7117 10.23 33.3011 1.57029

CAGE analysis