Hb_000798_060

Information

Type transcription factor
Description TF Family: PHD
Location Contig798: 34277-43454
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58596: 34356-43558 , PASA_asmbl_58598: 34352-43560
cDNA
(Sanger)
(ID:Location)		 007_N01.ab1: 34356-38496

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000798_060 0.0 transcription factor TF Family: PHD -
2 Hb_000920_040 0.0826250515 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
3 Hb_008725_250 0.0920097001 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
4 Hb_015941_030 0.0964287289 - - unknown [Populus trichocarpa]
5 Hb_004055_010 0.0967274564 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_086063_010 0.1014507099 - - soluble diacylglycerol acyltransferase [Ricinus communis]
7 Hb_000032_620 0.1020812623 - - hypothetical protein RCOM_1311830 [Ricinus communis]
8 Hb_004109_200 0.1031369829 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
9 Hb_009615_150 0.1068470521 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
10 Hb_000373_270 0.1076249079 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
11 Hb_000059_210 0.1080363135 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000300_280 0.1085773342 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
13 Hb_156850_030 0.1086839407 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
14 Hb_001655_070 0.1093727337 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
15 Hb_000077_080 0.109394508 - - PREDICTED: uncharacterized protein LOC105646929 [Jatropha curcas]
16 Hb_005147_110 0.1099950165 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
17 Hb_000392_070 0.110431539 - - catalytic, putative [Ricinus communis]
18 Hb_021254_030 0.1109582125 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
19 Hb_002475_160 0.1122173371 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
20 Hb_029584_080 0.1125284116 - - serine acetyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000798_060 Hb_000798_060 Hb_000920_040 Hb_000920_040 Hb_000798_060--Hb_000920_040 Hb_008725_250 Hb_008725_250 Hb_000798_060--Hb_008725_250 Hb_015941_030 Hb_015941_030 Hb_000798_060--Hb_015941_030 Hb_004055_010 Hb_004055_010 Hb_000798_060--Hb_004055_010 Hb_086063_010 Hb_086063_010 Hb_000798_060--Hb_086063_010 Hb_000032_620 Hb_000032_620 Hb_000798_060--Hb_000032_620 Hb_002270_010 Hb_002270_010 Hb_000920_040--Hb_002270_010 Hb_000300_280 Hb_000300_280 Hb_000920_040--Hb_000300_280 Hb_000370_030 Hb_000370_030 Hb_000920_040--Hb_000370_030 Hb_002248_140 Hb_002248_140 Hb_000920_040--Hb_002248_140 Hb_015401_020 Hb_015401_020 Hb_000920_040--Hb_015401_020 Hb_005147_110 Hb_005147_110 Hb_008725_250--Hb_005147_110 Hb_004310_060 Hb_004310_060 Hb_008725_250--Hb_004310_060 Hb_005914_230 Hb_005914_230 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_029584_080 Hb_029584_080 Hb_015941_030--Hb_029584_080 Hb_000808_040 Hb_000808_040 Hb_015941_030--Hb_000808_040 Hb_002232_170 Hb_002232_170 Hb_015941_030--Hb_002232_170 Hb_000116_110 Hb_000116_110 Hb_015941_030--Hb_000116_110 Hb_008406_160 Hb_008406_160 Hb_015941_030--Hb_008406_160 Hb_002475_160 Hb_002475_160 Hb_015941_030--Hb_002475_160 Hb_008959_030 Hb_008959_030 Hb_004055_010--Hb_008959_030 Hb_004221_010 Hb_004221_010 Hb_004055_010--Hb_004221_010 Hb_000483_350 Hb_000483_350 Hb_004055_010--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_004055_010--Hb_004109_200 Hb_001655_070 Hb_001655_070 Hb_004055_010--Hb_001655_070 Hb_002762_060 Hb_002762_060 Hb_004055_010--Hb_002762_060 Hb_164010_060 Hb_164010_060 Hb_086063_010--Hb_164010_060 Hb_031091_010 Hb_031091_010 Hb_086063_010--Hb_031091_010 Hb_033095_020 Hb_033095_020 Hb_086063_010--Hb_033095_020 Hb_086063_010--Hb_000032_620 Hb_001168_040 Hb_001168_040 Hb_086063_010--Hb_001168_040 Hb_001220_030 Hb_001220_030 Hb_000032_620--Hb_001220_030 Hb_001610_110 Hb_001610_110 Hb_000032_620--Hb_001610_110 Hb_005928_110 Hb_005928_110 Hb_000032_620--Hb_005928_110 Hb_000032_620--Hb_164010_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
253.514 182.392 34.7213 71.1319 183.743 209.909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
225.297 114.406 108.458 52.4822 24.1965

CAGE analysis