Hb_000802_090

Information

Type -
Description -
Location Contig802: 112911-119721
Sequence    

Annotation

kegg
ID rcu:RCOM_0631280
description ornithine aminotransferase, putative (EC:2.6.1.13)
nr
ID XP_002519647.1
description ornithine aminotransferase, putative [Ricinus communis]
swissprot
ID Q9FNK4
description Ornithine aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=DELTA-OAT PE=1 SV=1
trembl
ID B9S0X8
description Ornithine aminotransferase, putative OS=Ricinus communis GN=RCOM_0631280 PE=3 SV=1
Gene Ontology
ID GO:0004587
description ornithine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58833: 112965-119631
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_090 0.0 - - ornithine aminotransferase, putative [Ricinus communis]
2 Hb_011360_050 0.0426769801 - - PREDICTED: BAG family molecular chaperone regulator 8, chloroplastic [Jatropha curcas]
3 Hb_002232_480 0.0608179044 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
4 Hb_001329_200 0.064372353 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
5 Hb_003398_080 0.0716165043 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
6 Hb_000205_240 0.0750310574 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_007839_020 0.0772617529 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004994_240 0.0799432792 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
9 Hb_007017_040 0.0804514032 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
10 Hb_001328_080 0.0837068083 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
11 Hb_002982_020 0.0847924656 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
12 Hb_001300_010 0.0861398854 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
13 Hb_001257_100 0.086997043 transcription factor TF Family: E2F-DP PREDICTED: transcription factor E2FB isoform X1 [Jatropha curcas]
14 Hb_003688_180 0.0882506661 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
15 Hb_000649_250 0.0891264093 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
16 Hb_000120_910 0.089571973 - - plant ubiquilin, putative [Ricinus communis]
17 Hb_004143_100 0.0896626653 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000402_230 0.0903105436 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
19 Hb_000671_080 0.0908068495 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
20 Hb_000363_120 0.0909120804 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]

Gene co-expression network

sample Hb_000802_090 Hb_000802_090 Hb_011360_050 Hb_011360_050 Hb_000802_090--Hb_011360_050 Hb_002232_480 Hb_002232_480 Hb_000802_090--Hb_002232_480 Hb_001329_200 Hb_001329_200 Hb_000802_090--Hb_001329_200 Hb_003398_080 Hb_003398_080 Hb_000802_090--Hb_003398_080 Hb_000205_240 Hb_000205_240 Hb_000802_090--Hb_000205_240 Hb_007839_020 Hb_007839_020 Hb_000802_090--Hb_007839_020 Hb_011360_050--Hb_007839_020 Hb_011360_050--Hb_002232_480 Hb_002982_020 Hb_002982_020 Hb_011360_050--Hb_002982_020 Hb_011360_050--Hb_001329_200 Hb_000089_180 Hb_000089_180 Hb_011360_050--Hb_000089_180 Hb_004994_240 Hb_004994_240 Hb_002232_480--Hb_004994_240 Hb_001300_010 Hb_001300_010 Hb_002232_480--Hb_001300_010 Hb_001366_090 Hb_001366_090 Hb_002232_480--Hb_001366_090 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_009615_160 Hb_009615_160 Hb_001329_200--Hb_009615_160 Hb_001329_200--Hb_007839_020 Hb_022425_060 Hb_022425_060 Hb_001329_200--Hb_022425_060 Hb_001328_080 Hb_001328_080 Hb_001329_200--Hb_001328_080 Hb_003398_080--Hb_001300_010 Hb_000861_080 Hb_000861_080 Hb_003398_080--Hb_000861_080 Hb_000402_230 Hb_000402_230 Hb_003398_080--Hb_000402_230 Hb_003398_080--Hb_004994_240 Hb_001545_150 Hb_001545_150 Hb_003398_080--Hb_001545_150 Hb_000120_910 Hb_000120_910 Hb_003398_080--Hb_000120_910 Hb_000363_120 Hb_000363_120 Hb_000205_240--Hb_000363_120 Hb_084490_010 Hb_084490_010 Hb_000205_240--Hb_084490_010 Hb_000649_250 Hb_000649_250 Hb_000205_240--Hb_000649_250 Hb_006738_050 Hb_006738_050 Hb_000205_240--Hb_006738_050 Hb_000205_240--Hb_003398_080 Hb_010407_080 Hb_010407_080 Hb_007839_020--Hb_010407_080 Hb_007839_020--Hb_001328_080 Hb_001408_110 Hb_001408_110 Hb_007839_020--Hb_001408_110 Hb_007839_020--Hb_022425_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.58129 27.7832 16.3548 22.0222 10.602 9.21529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4612 10.2631 10.0511 15.0589 9.24684

CAGE analysis