Hb_000802_100

Information

Type -
Description -
Location Contig802: 129104-130284
Sequence    

Annotation

kegg
ID rcu:RCOM_0631300
description hypothetical protein
nr
ID XP_012072128.1
description PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
swissprot
ID A4IGZ4
description N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis GN=naa38 PE=3 SV=2
trembl
ID A0A067L0H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04638 PE=4 SV=1
Gene Ontology
ID GO:0005634
description n-alpha-acetyltransferase 38- auxiliary subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58834: 129108-130418 , PASA_asmbl_58835: 129108-130398 , PASA_asmbl_58836: 129108-130480 , PASA_asmbl_58837: 129400-130418
cDNA
(Sanger)
(ID:Location)		 001_G20.ab1: 129314-130398

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_100 0.0 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
2 Hb_001314_040 0.0832507984 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
3 Hb_002876_120 0.0862860945 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
4 Hb_001157_010 0.0961882769 - - deoxyhypusine synthase, putative [Ricinus communis]
5 Hb_000530_070 0.0988431302 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
6 Hb_003579_030 0.1042223643 - - phosphatase 2C family protein [Populus trichocarpa]
7 Hb_003581_260 0.1042695656 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
8 Hb_020301_040 0.1044519413 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
9 Hb_007594_120 0.1065835113 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
10 Hb_001279_340 0.109173508 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
11 Hb_001235_110 0.1094112173 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
12 Hb_000069_700 0.1103580828 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
13 Hb_001135_210 0.1110203496 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
14 Hb_006569_100 0.1126273794 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
15 Hb_020419_020 0.113098385 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
16 Hb_000012_100 0.1143587556 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
17 Hb_001616_030 0.1160132783 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
18 Hb_032969_030 0.1160861772 - - calmodulin binding protein, putative [Ricinus communis]
19 Hb_002182_030 0.1180835707 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
20 Hb_001956_070 0.120541606 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000802_100 Hb_000802_100 Hb_001314_040 Hb_001314_040 Hb_000802_100--Hb_001314_040 Hb_002876_120 Hb_002876_120 Hb_000802_100--Hb_002876_120 Hb_001157_010 Hb_001157_010 Hb_000802_100--Hb_001157_010 Hb_000530_070 Hb_000530_070 Hb_000802_100--Hb_000530_070 Hb_003579_030 Hb_003579_030 Hb_000802_100--Hb_003579_030 Hb_003581_260 Hb_003581_260 Hb_000802_100--Hb_003581_260 Hb_006569_100 Hb_006569_100 Hb_001314_040--Hb_006569_100 Hb_001314_040--Hb_001157_010 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_000224_140 Hb_000224_140 Hb_001314_040--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_001314_040--Hb_068056_030 Hb_007594_120 Hb_007594_120 Hb_002876_120--Hb_007594_120 Hb_002876_120--Hb_003579_030 Hb_020301_040 Hb_020301_040 Hb_002876_120--Hb_020301_040 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_001157_010--Hb_006569_100 Hb_001157_010--Hb_000530_070 Hb_000530_070--Hb_001314_040 Hb_003581_220 Hb_003581_220 Hb_000530_070--Hb_003581_220 Hb_002026_120 Hb_002026_120 Hb_000530_070--Hb_002026_120 Hb_001076_020 Hb_001076_020 Hb_000530_070--Hb_001076_020 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_003579_030--Hb_020301_040 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_003581_260--Hb_002876_120 Hb_001159_080 Hb_001159_080 Hb_003581_260--Hb_001159_080 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8162 5.93373 18.3353 11.2512 8.26115 10.9393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.3271 60.0697 60.5341 7.74156 11.1689

CAGE analysis