Hb_000802_110

Information

Type -
Description -
Location Contig802: 131890-134334
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_110 0.0 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_000343_180 0.141725383 - - NDWp3 [Podospora anserina]
3 Hb_168707_040 0.1648637656 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
4 Hb_000672_150 0.2033941157 - - Patatin T5 precursor, putative [Ricinus communis]
5 Hb_014613_010 0.2201464671 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
6 Hb_002686_120 0.2228821961 - - short-chain type dehydrogenase, putative [Ricinus communis]
7 Hb_001894_090 0.2276495528 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH90 [Jatropha curcas]
8 Hb_007558_020 0.2329166895 - - hypothetical protein JCGZ_17631 [Jatropha curcas]
9 Hb_000676_270 0.2375720541 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
10 Hb_023344_080 0.240061765 - - PREDICTED: uncharacterized protein LOC105644472 isoform X1 [Jatropha curcas]
11 Hb_027467_010 0.2401097471 - - hypothetical protein PRUPE_ppa004106mg [Prunus persica]
12 Hb_000111_480 0.2465804361 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
13 Hb_002849_140 0.2468712757 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
14 Hb_003605_240 0.2477153355 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
15 Hb_002110_240 0.251811974 - - clathrin assembly protein, putative [Ricinus communis]
16 Hb_000538_030 0.2564655752 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_001199_040 0.2584999327 - - unnamed protein product [Coffea canephora]
18 Hb_168319_010 0.25873302 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
19 Hb_003777_050 0.2588980578 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
20 Hb_000057_140 0.260110456 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000802_110 Hb_000802_110 Hb_000343_180 Hb_000343_180 Hb_000802_110--Hb_000343_180 Hb_168707_040 Hb_168707_040 Hb_000802_110--Hb_168707_040 Hb_000672_150 Hb_000672_150 Hb_000802_110--Hb_000672_150 Hb_014613_010 Hb_014613_010 Hb_000802_110--Hb_014613_010 Hb_002686_120 Hb_002686_120 Hb_000802_110--Hb_002686_120 Hb_001894_090 Hb_001894_090 Hb_000802_110--Hb_001894_090 Hb_002110_240 Hb_002110_240 Hb_000343_180--Hb_002110_240 Hb_008173_030 Hb_008173_030 Hb_000343_180--Hb_008173_030 Hb_000732_250 Hb_000732_250 Hb_000343_180--Hb_000732_250 Hb_000975_360 Hb_000975_360 Hb_000343_180--Hb_000975_360 Hb_007558_020 Hb_007558_020 Hb_000343_180--Hb_007558_020 Hb_168707_040--Hb_000672_150 Hb_128524_020 Hb_128524_020 Hb_168707_040--Hb_128524_020 Hb_027467_010 Hb_027467_010 Hb_168707_040--Hb_027467_010 Hb_000139_100 Hb_000139_100 Hb_168707_040--Hb_000139_100 Hb_002766_050 Hb_002766_050 Hb_168707_040--Hb_002766_050 Hb_001959_120 Hb_001959_120 Hb_000672_150--Hb_001959_120 Hb_001113_030 Hb_001113_030 Hb_000672_150--Hb_001113_030 Hb_001472_130 Hb_001472_130 Hb_000672_150--Hb_001472_130 Hb_000671_170 Hb_000671_170 Hb_000672_150--Hb_000671_170 Hb_000672_150--Hb_008173_030 Hb_014613_010--Hb_000343_180 Hb_014613_010--Hb_002686_120 Hb_000260_290 Hb_000260_290 Hb_014613_010--Hb_000260_290 Hb_002035_110 Hb_002035_110 Hb_014613_010--Hb_002035_110 Hb_000676_270 Hb_000676_270 Hb_014613_010--Hb_000676_270 Hb_002686_120--Hb_002035_110 Hb_000111_480 Hb_000111_480 Hb_002686_120--Hb_000111_480 Hb_006573_300 Hb_006573_300 Hb_002686_120--Hb_006573_300 Hb_004631_210 Hb_004631_210 Hb_002686_120--Hb_004631_210 Hb_006453_010 Hb_006453_010 Hb_002686_120--Hb_006453_010 Hb_002686_120--Hb_000343_180 Hb_001894_090--Hb_000343_180 Hb_001894_090--Hb_000260_290 Hb_001894_090--Hb_002686_120 Hb_001863_440 Hb_001863_440 Hb_001894_090--Hb_001863_440 Hb_001433_180 Hb_001433_180 Hb_001894_090--Hb_001433_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.151144 4.44509 1.73036 0.4592 0.0319329 0.0225405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.09968 1.7519 3.2568 1.57828 0.272339

CAGE analysis