Hb_000802_130

Information

Type -
Description -
Location Contig802: 137670-140157
Sequence    

Annotation

kegg
ID rcu:RCOM_0631360
description Protease degS precursor, putative (EC:1.3.1.74)
nr
ID KDP37993.1
description hypothetical protein JCGZ_04636 [Jatropha curcas]
swissprot
ID Q9SEL7
description Protease Do-like 5, chloroplastic OS=Arabidopsis thaliana GN=DEGP5 PE=1 SV=3
trembl
ID A0A067KSL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04636 PE=4 SV=1
Gene Ontology
ID GO:0031977
description protease do-like chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58842: 137547-139526 , PASA_asmbl_58843: 137547-139750
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000802_130 0.0 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
2 Hb_000613_120 0.0801213665 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
3 Hb_021650_010 0.0812296979 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
4 Hb_001430_020 0.0829062365 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
5 Hb_004109_260 0.0846147091 - - hypothetical protein JCGZ_06843 [Jatropha curcas]
6 Hb_011861_050 0.0914284198 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
7 Hb_102948_010 0.0927624916 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
8 Hb_012438_030 0.0951159759 - - PREDICTED: protein sym-1 [Jatropha curcas]
9 Hb_005162_110 0.0952047547 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
10 Hb_001377_040 0.0955933873 - - chitinase, putative [Ricinus communis]
11 Hb_001438_010 0.0959724184 - - PREDICTED: uncharacterized protein LOC105639111 isoform X1 [Jatropha curcas]
12 Hb_001824_080 0.096480017 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
13 Hb_002150_140 0.097316263 - - PREDICTED: girdin-like [Jatropha curcas]
14 Hb_002631_240 0.0976191322 - - JHL17M24.3 [Jatropha curcas]
15 Hb_000003_780 0.1007685311 - - hexokinase [Manihot esculenta]
16 Hb_002218_020 0.1023945638 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
17 Hb_001935_100 0.1026859235 - - structural molecule, putative [Ricinus communis]
18 Hb_006787_090 0.1029718723 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
19 Hb_003752_070 0.1047619131 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
20 Hb_005946_040 0.1051457545 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000802_130 Hb_000802_130 Hb_000613_120 Hb_000613_120 Hb_000802_130--Hb_000613_120 Hb_021650_010 Hb_021650_010 Hb_000802_130--Hb_021650_010 Hb_001430_020 Hb_001430_020 Hb_000802_130--Hb_001430_020 Hb_004109_260 Hb_004109_260 Hb_000802_130--Hb_004109_260 Hb_011861_050 Hb_011861_050 Hb_000802_130--Hb_011861_050 Hb_102948_010 Hb_102948_010 Hb_000802_130--Hb_102948_010 Hb_010174_090 Hb_010174_090 Hb_000613_120--Hb_010174_090 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_006787_090 Hb_006787_090 Hb_000613_120--Hb_006787_090 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_003752_070 Hb_003752_070 Hb_021650_010--Hb_003752_070 Hb_005162_110 Hb_005162_110 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_000051_060 Hb_000051_060 Hb_021650_010--Hb_000051_060 Hb_001195_270 Hb_001195_270 Hb_021650_010--Hb_001195_270 Hb_001430_020--Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_001430_020--Hb_002218_020 Hb_003883_010 Hb_003883_010 Hb_001430_020--Hb_003883_010 Hb_005235_070 Hb_005235_070 Hb_001430_020--Hb_005235_070 Hb_000555_020 Hb_000555_020 Hb_001430_020--Hb_000555_020 Hb_001824_080 Hb_001824_080 Hb_004109_260--Hb_001824_080 Hb_004339_040 Hb_004339_040 Hb_004109_260--Hb_004339_040 Hb_001438_010 Hb_001438_010 Hb_004109_260--Hb_001438_010 Hb_000880_070 Hb_000880_070 Hb_004109_260--Hb_000880_070 Hb_000480_040 Hb_000480_040 Hb_011861_050--Hb_000480_040 Hb_000144_060 Hb_000144_060 Hb_011861_050--Hb_000144_060 Hb_000345_370 Hb_000345_370 Hb_011861_050--Hb_000345_370 Hb_000309_020 Hb_000309_020 Hb_011861_050--Hb_000309_020 Hb_000941_100 Hb_000941_100 Hb_011861_050--Hb_000941_100 Hb_005147_080 Hb_005147_080 Hb_011861_050--Hb_005147_080 Hb_102948_010--Hb_002218_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_102948_010--Hb_000555_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.31676 9.07824 28.8068 9.9599 7.62221 10.1174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.81797 7.71524 10.8584 6.10166 26.3161

CAGE analysis