Hb_000803_110

Information

Type -
Description -
Location Contig803: 156176-160608
Sequence    

Annotation

kegg
ID rcu:RCOM_1578700
description polyadenylate-binding protein, putative
nr
ID XP_012090039.1
description PREDICTED: RNA-binding protein 8A [Jatropha curcas]
swissprot
ID B5DGI7
description RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1
trembl
ID A0A067JH32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25949 PE=4 SV=1
Gene Ontology
ID GO:0005730
description rna-binding protein 8a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58889: 156219-160357
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_110 0.0 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
2 Hb_011848_010 0.0634489534 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
3 Hb_003091_010 0.0762944537 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
4 Hb_000976_320 0.0769906925 - - UPF0061 protein azo1574 [Morus notabilis]
5 Hb_000394_190 0.0812689383 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
6 Hb_012799_110 0.0822114165 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
7 Hb_000072_140 0.0843002661 - - -
8 Hb_009222_010 0.084631496 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001142_050 0.0872769707 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
10 Hb_004701_030 0.0873072367 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
11 Hb_001752_030 0.0920650511 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
12 Hb_000261_250 0.0922541482 - - elongation factor 1-alpha [Lepidium sativum]
13 Hb_000617_220 0.0929210268 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
14 Hb_004044_020 0.0931091948 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
15 Hb_142439_010 0.0943302309 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
16 Hb_000359_330 0.0947207064 - - conserved hypothetical protein [Ricinus communis]
17 Hb_105386_010 0.0953670537 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
18 Hb_000175_390 0.0954500733 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
19 Hb_003849_060 0.0955466286 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
20 Hb_001616_090 0.0967618593 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_110 Hb_000803_110 Hb_011848_010 Hb_011848_010 Hb_000803_110--Hb_011848_010 Hb_003091_010 Hb_003091_010 Hb_000803_110--Hb_003091_010 Hb_000976_320 Hb_000976_320 Hb_000803_110--Hb_000976_320 Hb_000394_190 Hb_000394_190 Hb_000803_110--Hb_000394_190 Hb_012799_110 Hb_012799_110 Hb_000803_110--Hb_012799_110 Hb_000072_140 Hb_000072_140 Hb_000803_110--Hb_000072_140 Hb_011848_010--Hb_003091_010 Hb_000617_220 Hb_000617_220 Hb_011848_010--Hb_000617_220 Hb_004450_060 Hb_004450_060 Hb_011848_010--Hb_004450_060 Hb_000359_330 Hb_000359_330 Hb_011848_010--Hb_000359_330 Hb_009222_010 Hb_009222_010 Hb_011848_010--Hb_009222_010 Hb_003091_010--Hb_000617_220 Hb_004701_030 Hb_004701_030 Hb_003091_010--Hb_004701_030 Hb_003091_010--Hb_000359_330 Hb_003091_010--Hb_004450_060 Hb_001754_240 Hb_001754_240 Hb_003091_010--Hb_001754_240 Hb_106552_050 Hb_106552_050 Hb_000976_320--Hb_106552_050 Hb_011942_080 Hb_011942_080 Hb_000976_320--Hb_011942_080 Hb_008864_110 Hb_008864_110 Hb_000976_320--Hb_008864_110 Hb_000768_110 Hb_000768_110 Hb_000976_320--Hb_000768_110 Hb_000322_100 Hb_000322_100 Hb_000976_320--Hb_000322_100 Hb_001677_210 Hb_001677_210 Hb_000976_320--Hb_001677_210 Hb_000261_250 Hb_000261_250 Hb_000394_190--Hb_000261_250 Hb_000244_300 Hb_000244_300 Hb_000394_190--Hb_000244_300 Hb_000787_170 Hb_000787_170 Hb_000394_190--Hb_000787_170 Hb_003467_010 Hb_003467_010 Hb_000394_190--Hb_003467_010 Hb_000394_190--Hb_012799_110 Hb_033095_020 Hb_033095_020 Hb_000394_190--Hb_033095_020 Hb_012799_110--Hb_011942_080 Hb_003849_060 Hb_003849_060 Hb_012799_110--Hb_003849_060 Hb_012799_110--Hb_011848_010 Hb_012799_110--Hb_033095_020 Hb_012799_110--Hb_003467_010 Hb_000088_200 Hb_000088_200 Hb_000072_140--Hb_000088_200 Hb_000072_140--Hb_000617_220 Hb_000072_140--Hb_011848_010 Hb_004044_020 Hb_004044_020 Hb_000072_140--Hb_004044_020 Hb_000072_140--Hb_003091_010 Hb_004525_100 Hb_004525_100 Hb_000072_140--Hb_004525_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
155.048 100.793 96.0864 54.7704 188.448 248.41
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
75.5257 128.63 73.7567 50.2364 35.8054

CAGE analysis