Hb_000803_120

Information

Type -
Description -
Location Contig803: 188106-202039
Sequence    

Annotation

kegg
ID rcu:RCOM_1578720
description nucleic acid binding protein, putative
nr
ID XP_012090040.1
description PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
swissprot
ID Q0D3J9
description Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1
trembl
ID A0A067JQ51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25951 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58890: 187992-192083 , PASA_asmbl_58891: 196624-196927 , PASA_asmbl_58893: 199934-200551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_120 0.0 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
2 Hb_007575_030 0.1127366007 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
3 Hb_000309_030 0.1131004103 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
4 Hb_005694_180 0.1232876669 - - PREDICTED: cytochrome b5 [Jatropha curcas]
5 Hb_000661_220 0.1246976046 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
6 Hb_004297_090 0.1261920276 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
7 Hb_000567_090 0.1314249217 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
8 Hb_005485_070 0.1314967404 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
9 Hb_000363_410 0.1319758085 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
10 Hb_002301_250 0.1323576059 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Jatropha curcas]
11 Hb_004883_020 0.1335949188 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
12 Hb_000116_240 0.1346302164 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
13 Hb_000318_170 0.1353198707 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
14 Hb_001677_100 0.1402762423 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
15 Hb_000235_050 0.1404510245 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003227_010 0.1424034427 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
17 Hb_153257_010 0.1439176772 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
18 Hb_172706_020 0.1446580591 - - PREDICTED: protein ABIL2 [Jatropha curcas]
19 Hb_002093_050 0.1450012502 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
20 Hb_000165_070 0.1451403894 - - hypothetical protein JCGZ_01211 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_120 Hb_000803_120 Hb_007575_030 Hb_007575_030 Hb_000803_120--Hb_007575_030 Hb_000309_030 Hb_000309_030 Hb_000803_120--Hb_000309_030 Hb_005694_180 Hb_005694_180 Hb_000803_120--Hb_005694_180 Hb_000661_220 Hb_000661_220 Hb_000803_120--Hb_000661_220 Hb_004297_090 Hb_004297_090 Hb_000803_120--Hb_004297_090 Hb_000567_090 Hb_000567_090 Hb_000803_120--Hb_000567_090 Hb_004883_020 Hb_004883_020 Hb_007575_030--Hb_004883_020 Hb_000261_310 Hb_000261_310 Hb_007575_030--Hb_000261_310 Hb_000165_070 Hb_000165_070 Hb_007575_030--Hb_000165_070 Hb_000116_240 Hb_000116_240 Hb_007575_030--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_007575_030--Hb_000318_170 Hb_000042_380 Hb_000042_380 Hb_007575_030--Hb_000042_380 Hb_000309_030--Hb_000116_240 Hb_000309_030--Hb_000261_310 Hb_000309_030--Hb_004883_020 Hb_000309_030--Hb_000318_170 Hb_010050_020 Hb_010050_020 Hb_000309_030--Hb_010050_020 Hb_000590_070 Hb_000590_070 Hb_000309_030--Hb_000590_070 Hb_003430_080 Hb_003430_080 Hb_005694_180--Hb_003430_080 Hb_034507_060 Hb_034507_060 Hb_005694_180--Hb_034507_060 Hb_023226_030 Hb_023226_030 Hb_005694_180--Hb_023226_030 Hb_001195_420 Hb_001195_420 Hb_005694_180--Hb_001195_420 Hb_005694_180--Hb_000309_030 Hb_012760_090 Hb_012760_090 Hb_005694_180--Hb_012760_090 Hb_024758_020 Hb_024758_020 Hb_000661_220--Hb_024758_020 Hb_001677_100 Hb_001677_100 Hb_000661_220--Hb_001677_100 Hb_000661_220--Hb_000567_090 Hb_000000_330 Hb_000000_330 Hb_000661_220--Hb_000000_330 Hb_002849_050 Hb_002849_050 Hb_000661_220--Hb_002849_050 Hb_004297_090--Hb_001677_100 Hb_000365_200 Hb_000365_200 Hb_004297_090--Hb_000365_200 Hb_003683_130 Hb_003683_130 Hb_004297_090--Hb_003683_130 Hb_000260_400 Hb_000260_400 Hb_004297_090--Hb_000260_400 Hb_004297_090--Hb_004883_020 Hb_009296_020 Hb_009296_020 Hb_004297_090--Hb_009296_020 Hb_080147_020 Hb_080147_020 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_086639_050 Hb_086639_050 Hb_000567_090--Hb_086639_050 Hb_001221_580 Hb_001221_580 Hb_000567_090--Hb_001221_580 Hb_000098_180 Hb_000098_180 Hb_000567_090--Hb_000098_180 Hb_001117_080 Hb_001117_080 Hb_000567_090--Hb_001117_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.422666 1.9871 4.41868 3.90042 0.462764 1.04393
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.35464 0.229841 0.220812 4.38522 1.67191

CAGE analysis