Hb_000803_130

Information

Type -
Description -
Location Contig803: 205213-205674
Sequence    

Annotation

kegg
ID rcu:RCOM_1578740
description hypothetical protein
nr
ID XP_002513527.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIF8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58894: 204004-205559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002259_010 0.3037948161 - - conserved hypothetical protein [Ricinus communis]
3 Hb_015609_020 0.3581851305 - - PREDICTED: uncharacterized protein LOC105642775 [Jatropha curcas]
4 Hb_102699_010 0.3686767385 desease resistance Gene Name: NB-ARC NBS-LRR type disease resistance protein [Populus trichocarpa]
5 Hb_004079_020 0.3804934894 - - hypothetical protein glysoja_031528 [Glycine soja]
6 Hb_032225_020 0.3993101406 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
7 Hb_001195_540 0.3994292499 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
8 Hb_179447_010 0.4039324767 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
9 Hb_006237_020 0.4082068193 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_000248_120 0.4109367014 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
11 Hb_000732_270 0.4156940685 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
12 Hb_000445_080 0.4177543579 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
13 Hb_179112_010 0.42337233 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]
14 Hb_001032_040 0.4234031669 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
15 Hb_075136_010 0.4280448626 - - Protein SSU72, putative [Ricinus communis]
16 Hb_001623_440 0.4281725525 - - hypothetical protein JCGZ_12908 [Jatropha curcas]
17 Hb_108706_010 0.4312625008 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
18 Hb_016777_030 0.4314750654 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
19 Hb_120155_010 0.4330574989 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_007054_020 0.4333944087 - - -

Gene co-expression network

sample Hb_000803_130 Hb_000803_130 Hb_002259_010 Hb_002259_010 Hb_000803_130--Hb_002259_010 Hb_015609_020 Hb_015609_020 Hb_000803_130--Hb_015609_020 Hb_102699_010 Hb_102699_010 Hb_000803_130--Hb_102699_010 Hb_004079_020 Hb_004079_020 Hb_000803_130--Hb_004079_020 Hb_032225_020 Hb_032225_020 Hb_000803_130--Hb_032225_020 Hb_001195_540 Hb_001195_540 Hb_000803_130--Hb_001195_540 Hb_002259_010--Hb_001195_540 Hb_005539_120 Hb_005539_120 Hb_002259_010--Hb_005539_120 Hb_052764_040 Hb_052764_040 Hb_002259_010--Hb_052764_040 Hb_002733_010 Hb_002733_010 Hb_002259_010--Hb_002733_010 Hb_000011_090 Hb_000011_090 Hb_002259_010--Hb_000011_090 Hb_006502_080 Hb_006502_080 Hb_015609_020--Hb_006502_080 Hb_032927_010 Hb_032927_010 Hb_015609_020--Hb_032927_010 Hb_000347_510 Hb_000347_510 Hb_015609_020--Hb_000347_510 Hb_075136_010 Hb_075136_010 Hb_015609_020--Hb_075136_010 Hb_000413_160 Hb_000413_160 Hb_015609_020--Hb_000413_160 Hb_000329_770 Hb_000329_770 Hb_015609_020--Hb_000329_770 Hb_005595_020 Hb_005595_020 Hb_102699_010--Hb_005595_020 Hb_072775_010 Hb_072775_010 Hb_102699_010--Hb_072775_010 Hb_001916_080 Hb_001916_080 Hb_102699_010--Hb_001916_080 Hb_007484_040 Hb_007484_040 Hb_102699_010--Hb_007484_040 Hb_016777_030 Hb_016777_030 Hb_102699_010--Hb_016777_030 Hb_157340_010 Hb_157340_010 Hb_102699_010--Hb_157340_010 Hb_005914_240 Hb_005914_240 Hb_004079_020--Hb_005914_240 Hb_006344_010 Hb_006344_010 Hb_004079_020--Hb_006344_010 Hb_140572_010 Hb_140572_010 Hb_004079_020--Hb_140572_010 Hb_123521_010 Hb_123521_010 Hb_004079_020--Hb_123521_010 Hb_001277_310 Hb_001277_310 Hb_004079_020--Hb_001277_310 Hb_001221_270 Hb_001221_270 Hb_004079_020--Hb_001221_270 Hb_106005_010 Hb_106005_010 Hb_032225_020--Hb_106005_010 Hb_168737_010 Hb_168737_010 Hb_032225_020--Hb_168737_010 Hb_088065_010 Hb_088065_010 Hb_032225_020--Hb_088065_010 Hb_003581_010 Hb_003581_010 Hb_032225_020--Hb_003581_010 Hb_073559_010 Hb_073559_010 Hb_032225_020--Hb_073559_010 Hb_000265_130 Hb_000265_130 Hb_032225_020--Hb_000265_130 Hb_001087_020 Hb_001087_020 Hb_001195_540--Hb_001087_020 Hb_001512_020 Hb_001512_020 Hb_001195_540--Hb_001512_020 Hb_007904_140 Hb_007904_140 Hb_001195_540--Hb_007904_140 Hb_001195_540--Hb_005539_120 Hb_008768_030 Hb_008768_030 Hb_001195_540--Hb_008768_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.241019 0.856494 0 0 2.18408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548417 0 0.568608 0.203221 0

CAGE analysis