Hb_000803_170

Information

Type -
Description -
Location Contig803: 219023-223534
Sequence    

Annotation

kegg
ID rcu:RCOM_1578790
description hypothetical protein
nr
ID XP_012090048.1
description PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JQ56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25956 PE=4 SV=1
Gene Ontology
ID GO:0009534
description saccharopine dehydrogenase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58898: 218130-219319 , PASA_asmbl_58899: 219015-223401 , PASA_asmbl_58900: 219015-223401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_170 0.0 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
2 Hb_002811_250 0.0719454982 - - PREDICTED: probable ribose-5-phosphate isomerase 3, chloroplastic [Jatropha curcas]
3 Hb_010557_010 0.078758929 - - PREDICTED: 50S ribosomal protein L3, chloroplastic [Jatropha curcas]
4 Hb_005563_040 0.0790016578 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
5 Hb_000193_220 0.0804356857 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
6 Hb_000089_140 0.081713653 - - PREDICTED: uncharacterized protein LOC105636682 isoform X2 [Jatropha curcas]
7 Hb_001579_280 0.0868493368 - - PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Jatropha curcas]
8 Hb_000019_080 0.0945171412 transcription factor TF Family: bHLH PREDICTED: transcription factor ICE1 [Jatropha curcas]
9 Hb_000317_180 0.0953490679 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
10 Hb_058620_080 0.0955571631 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
11 Hb_027298_020 0.097879195 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
12 Hb_000045_050 0.10165448 - - PREDICTED: probable zinc metalloprotease EGY2, chloroplastic [Jatropha curcas]
13 Hb_000703_070 0.1019497144 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
14 Hb_010721_020 0.1029049988 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
15 Hb_134949_010 0.1033530616 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
16 Hb_005181_120 0.1034699229 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_010098_040 0.1037012911 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
18 Hb_002411_100 0.1051063222 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
19 Hb_003948_020 0.1096857009 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
20 Hb_000032_390 0.1099549395 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_170 Hb_000803_170 Hb_002811_250 Hb_002811_250 Hb_000803_170--Hb_002811_250 Hb_010557_010 Hb_010557_010 Hb_000803_170--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000803_170--Hb_005563_040 Hb_000193_220 Hb_000193_220 Hb_000803_170--Hb_000193_220 Hb_000089_140 Hb_000089_140 Hb_000803_170--Hb_000089_140 Hb_001579_280 Hb_001579_280 Hb_000803_170--Hb_001579_280 Hb_002811_250--Hb_000193_220 Hb_002811_250--Hb_010557_010 Hb_005181_120 Hb_005181_120 Hb_002811_250--Hb_005181_120 Hb_010098_040 Hb_010098_040 Hb_002811_250--Hb_010098_040 Hb_000679_080 Hb_000679_080 Hb_002811_250--Hb_000679_080 Hb_002411_100 Hb_002411_100 Hb_010557_010--Hb_002411_100 Hb_000703_070 Hb_000703_070 Hb_010557_010--Hb_000703_070 Hb_009393_130 Hb_009393_130 Hb_010557_010--Hb_009393_130 Hb_000045_050 Hb_000045_050 Hb_010557_010--Hb_000045_050 Hb_005488_160 Hb_005488_160 Hb_005563_040--Hb_005488_160 Hb_005563_040--Hb_002411_100 Hb_000442_070 Hb_000442_070 Hb_005563_040--Hb_000442_070 Hb_005563_040--Hb_001579_280 Hb_005563_040--Hb_010557_010 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_000317_180 Hb_000317_180 Hb_000089_140--Hb_000317_180 Hb_000089_140--Hb_002811_250 Hb_000856_280 Hb_000856_280 Hb_000089_140--Hb_000856_280 Hb_000089_140--Hb_010557_010 Hb_058620_080 Hb_058620_080 Hb_000089_140--Hb_058620_080 Hb_000019_080 Hb_000019_080 Hb_001579_280--Hb_000019_080 Hb_004837_100 Hb_004837_100 Hb_001579_280--Hb_004837_100 Hb_001579_280--Hb_000089_140 Hb_002811_310 Hb_002811_310 Hb_001579_280--Hb_002811_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.11893 2.24822 18.9652 7.27093 1.13955 1.06688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94376 1.55426 2.30629 2.56227 31.8631

CAGE analysis