Hb_000803_200

Information

Type -
Description -
Location Contig803: 249333-250883
Sequence    

Annotation

kegg
ID rcu:RCOM_1578930
description ubiquitin-conjugating enzyme E2 C, putative (EC:6.3.2.19)
nr
ID XP_002513536.1
description ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
swissprot
ID Q8L7T3
description Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1
trembl
ID B9RIG7
description Ubiquitin-conjugating enzyme E2 C, putative OS=Ricinus communis GN=RCOM_1578930 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58904: 248521-250907
cDNA
(Sanger)
(ID:Location)		 034_I10.ab1: 249230-250798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_200 0.0 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
2 Hb_000849_130 0.0923489102 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
3 Hb_006326_040 0.0933614243 - - conserved hypothetical protein [Ricinus communis]
4 Hb_055062_020 0.0947145022 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
5 Hb_001511_260 0.0947271339 - - tryptophan biosynthesis protein, putative [Ricinus communis]
6 Hb_007113_070 0.0987489428 - - protein with unknown function [Ricinus communis]
7 Hb_000045_310 0.1001069428 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
8 Hb_002303_060 0.1010609372 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002000_140 0.1029033944 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
10 Hb_000189_240 0.1032887157 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
11 Hb_000808_190 0.1044023811 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
12 Hb_002374_080 0.1045204095 - - PREDICTED: chloroplast processing peptidase-like isoform X1 [Jatropha curcas]
13 Hb_003362_030 0.1062144439 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
14 Hb_003605_160 0.1073618679 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
15 Hb_154948_040 0.1074285203 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
16 Hb_004889_020 0.1094019099 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
17 Hb_002681_200 0.1098290767 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
18 Hb_148121_040 0.1108535169 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
19 Hb_000392_340 0.1117859926 - - PREDICTED: vacuolar protein sorting-associated protein 29 [Jatropha curcas]
20 Hb_028396_010 0.1120498336 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_000803_200 Hb_000803_200 Hb_000849_130 Hb_000849_130 Hb_000803_200--Hb_000849_130 Hb_006326_040 Hb_006326_040 Hb_000803_200--Hb_006326_040 Hb_055062_020 Hb_055062_020 Hb_000803_200--Hb_055062_020 Hb_001511_260 Hb_001511_260 Hb_000803_200--Hb_001511_260 Hb_007113_070 Hb_007113_070 Hb_000803_200--Hb_007113_070 Hb_000045_310 Hb_000045_310 Hb_000803_200--Hb_000045_310 Hb_000009_290 Hb_000009_290 Hb_000849_130--Hb_000009_290 Hb_154948_040 Hb_154948_040 Hb_000849_130--Hb_154948_040 Hb_002105_100 Hb_002105_100 Hb_000849_130--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_000849_130--Hb_045003_010 Hb_002303_060 Hb_002303_060 Hb_000849_130--Hb_002303_060 Hb_000783_010 Hb_000783_010 Hb_000849_130--Hb_000783_010 Hb_001931_010 Hb_001931_010 Hb_006326_040--Hb_001931_010 Hb_008071_020 Hb_008071_020 Hb_006326_040--Hb_008071_020 Hb_004889_020 Hb_004889_020 Hb_006326_040--Hb_004889_020 Hb_000505_130 Hb_000505_130 Hb_006326_040--Hb_000505_130 Hb_000566_120 Hb_000566_120 Hb_006326_040--Hb_000566_120 Hb_028396_010 Hb_028396_010 Hb_006326_040--Hb_028396_010 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_000403_060 Hb_000403_060 Hb_055062_020--Hb_000403_060 Hb_003849_130 Hb_003849_130 Hb_055062_020--Hb_003849_130 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_001511_260--Hb_006326_040 Hb_000392_340 Hb_000392_340 Hb_001511_260--Hb_000392_340 Hb_000832_190 Hb_000832_190 Hb_001511_260--Hb_000832_190 Hb_000359_150 Hb_000359_150 Hb_001511_260--Hb_000359_150 Hb_001511_260--Hb_002303_060 Hb_007113_070--Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_007113_070--Hb_000002_380 Hb_003671_020 Hb_003671_020 Hb_007113_070--Hb_003671_020 Hb_007113_070--Hb_000403_060 Hb_005867_020 Hb_005867_020 Hb_007113_070--Hb_005867_020 Hb_007113_070--Hb_004889_020 Hb_000045_310--Hb_000566_120 Hb_000045_310--Hb_028396_010 Hb_006573_190 Hb_006573_190 Hb_000045_310--Hb_006573_190 Hb_024650_070 Hb_024650_070 Hb_000045_310--Hb_024650_070 Hb_000045_310--Hb_008071_020 Hb_000045_310--Hb_001931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.7392 11.9084 51.0868 59.3193 16.7253 38.3193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.6101 77.5815 48.0582 30.208 17.6639

CAGE analysis