Hb_000803_220

Information

Type -
Description -
Location Contig803: 255962-260803
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05400g
description POPTRDRAFT_1088048; Mg-chelatase subunit D family protein
nr
ID XP_012090057.1
description PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
swissprot
ID O24133
description Magnesium-chelatase subunit ChlD, chloroplastic OS=Nicotiana tabacum GN=CHLD PE=2 SV=1
trembl
ID A0A067JE82
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25963 PE=4 SV=1
Gene Ontology
ID GO:0009534
description magnesium-chelatase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58905: 256127-277337 , PASA_asmbl_58906: 256127-276677 , PASA_asmbl_58910: 258285-274918
cDNA
(Sanger)
(ID:Location)		 010_M16.ab1: 256127-258086 , 015_K17.ab1: 256127-258079 , 036_C23.ab1: 256127-258120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_220 0.0 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
2 Hb_007576_180 0.0676437033 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
3 Hb_010984_010 0.0776817539 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_164926_010 0.0872288417 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]
5 Hb_000803_240 0.104946921 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
6 Hb_001425_010 0.1161157671 - - sugar transporter, putative [Ricinus communis]
7 Hb_018043_020 0.1161606625 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
8 Hb_007894_190 0.119544768 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
9 Hb_008616_040 0.1213959591 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
10 Hb_000906_070 0.1263911862 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
11 Hb_159809_090 0.1274729581 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
12 Hb_001250_020 0.1284047434 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
13 Hb_002005_040 0.1284835722 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_003929_220 0.128630065 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_005618_150 0.1298082391 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
16 Hb_014361_110 0.1301117483 - - RNA binding protein, putative [Ricinus communis]
17 Hb_000997_140 0.1301975982 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
18 Hb_001437_120 0.1317947613 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
19 Hb_002783_070 0.1318630126 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
20 Hb_000224_220 0.132167492 - - PREDICTED: protein disulfide isomerase-like 2-3 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_220 Hb_000803_220 Hb_007576_180 Hb_007576_180 Hb_000803_220--Hb_007576_180 Hb_010984_010 Hb_010984_010 Hb_000803_220--Hb_010984_010 Hb_164926_010 Hb_164926_010 Hb_000803_220--Hb_164926_010 Hb_000803_240 Hb_000803_240 Hb_000803_220--Hb_000803_240 Hb_001425_010 Hb_001425_010 Hb_000803_220--Hb_001425_010 Hb_018043_020 Hb_018043_020 Hb_000803_220--Hb_018043_020 Hb_007576_180--Hb_010984_010 Hb_004629_030 Hb_004629_030 Hb_007576_180--Hb_004629_030 Hb_004837_020 Hb_004837_020 Hb_007576_180--Hb_004837_020 Hb_007576_180--Hb_001425_010 Hb_007576_180--Hb_018043_020 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_010984_010--Hb_000803_240 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010 Hb_007894_190 Hb_007894_190 Hb_164926_010--Hb_007894_190 Hb_002005_040 Hb_002005_040 Hb_164926_010--Hb_002005_040 Hb_005618_150 Hb_005618_150 Hb_164926_010--Hb_005618_150 Hb_004837_210 Hb_004837_210 Hb_164926_010--Hb_004837_210 Hb_164926_010--Hb_007576_180 Hb_001723_030 Hb_001723_030 Hb_000803_240--Hb_001723_030 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_001425_010--Hb_018043_020 Hb_001425_010--Hb_008616_040 Hb_159809_090 Hb_159809_090 Hb_001425_010--Hb_159809_090 Hb_000510_190 Hb_000510_190 Hb_001425_010--Hb_000510_190 Hb_003549_050 Hb_003549_050 Hb_001425_010--Hb_003549_050 Hb_003029_140 Hb_003029_140 Hb_001425_010--Hb_003029_140 Hb_018043_020--Hb_003029_140 Hb_018043_020--Hb_159809_090 Hb_001250_020 Hb_001250_020 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_008616_040 Hb_018043_020--Hb_004629_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38744 5.13823 12.9279 5.44631 3.82633 3.92406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99467 0.941566 0.862325 7.12013 24.1075

CAGE analysis