Hb_000803_230

Information

Type -
Description -
Location Contig803: 263090-263886
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_009613217.1
description PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58905: 256127-277337 , PASA_asmbl_58906: 256127-276677 , PASA_asmbl_58910: 258285-274918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_230 0.0 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
2 Hb_005920_030 0.1292421298 - - putative polyprotein [Oryza sativa Japonica Group]
3 Hb_000346_050 0.1302620561 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
4 Hb_019654_170 0.1405487187 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
5 Hb_043792_030 0.1511661809 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
6 Hb_001174_050 0.1559546591 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_003994_070 0.1604649865 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
8 Hb_006405_040 0.1613443705 - - hypothetical protein VITISV_026680 [Vitis vinifera]
9 Hb_001250_030 0.162699537 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003311_020 0.1634239872 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008055_030 0.1655076438 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_001856_280 0.1658460211 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
13 Hb_008834_010 0.1698330303 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
14 Hb_001383_080 0.1701325532 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
15 Hb_072173_010 0.1734690888 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
16 Hb_004520_010 0.1780970651 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
17 Hb_007543_020 0.178250485 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
18 Hb_034197_020 0.180668955 - - hypothetical protein VITISV_041099 [Vitis vinifera]
19 Hb_001385_070 0.1819568701 - - hypothetical protein VITISV_019194 [Vitis vinifera]
20 Hb_007885_110 0.1846134399 - - PREDICTED: uncharacterized protein LOC104109376 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_000803_230 Hb_000803_230 Hb_005920_030 Hb_005920_030 Hb_000803_230--Hb_005920_030 Hb_000346_050 Hb_000346_050 Hb_000803_230--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_000803_230--Hb_019654_170 Hb_043792_030 Hb_043792_030 Hb_000803_230--Hb_043792_030 Hb_001174_050 Hb_001174_050 Hb_000803_230--Hb_001174_050 Hb_003994_070 Hb_003994_070 Hb_000803_230--Hb_003994_070 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_001856_280 Hb_001856_280 Hb_005920_030--Hb_001856_280 Hb_005920_030--Hb_043792_030 Hb_003311_020 Hb_003311_020 Hb_005920_030--Hb_003311_020 Hb_005920_030--Hb_019654_170 Hb_000567_270 Hb_000567_270 Hb_005920_030--Hb_000567_270 Hb_000346_050--Hb_043792_030 Hb_000346_050--Hb_019654_170 Hb_000346_050--Hb_001856_280 Hb_003927_020 Hb_003927_020 Hb_000346_050--Hb_003927_020 Hb_150516_010 Hb_150516_010 Hb_000346_050--Hb_150516_010 Hb_000167_070 Hb_000167_070 Hb_000346_050--Hb_000167_070 Hb_019654_170--Hb_043792_030 Hb_019654_170--Hb_001856_280 Hb_019654_170--Hb_003311_020 Hb_020831_070 Hb_020831_070 Hb_019654_170--Hb_020831_070 Hb_043792_030--Hb_001856_280 Hb_043792_030--Hb_020831_070 Hb_043792_030--Hb_003311_020 Hb_001355_060 Hb_001355_060 Hb_001174_050--Hb_001355_060 Hb_159124_010 Hb_159124_010 Hb_001174_050--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_001174_050--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_001174_050--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_001174_050--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_001174_050--Hb_000142_090 Hb_009851_090 Hb_009851_090 Hb_003994_070--Hb_009851_090 Hb_003994_070--Hb_003311_020 Hb_155423_010 Hb_155423_010 Hb_003994_070--Hb_155423_010 Hb_035651_010 Hb_035651_010 Hb_003994_070--Hb_035651_010 Hb_003994_070--Hb_005920_030 Hb_001250_030 Hb_001250_030 Hb_003994_070--Hb_001250_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.56991 0.0763817 0.112221 0.0909684 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.656855 2.70849

CAGE analysis