Hb_000803_240

Information

Type -
Description -
Location Contig803: 273913-277060
Sequence    

Annotation

kegg
ID cic:CICLE_v100143612m
description hypothetical protein
nr
ID XP_006446210.1
description hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
swissprot
ID Q93SW0
description Magnesium-chelatase 67 kDa subunit OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=bchD PE=3 SV=1
trembl
ID V4U5T1
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100143612mg PE=4 SV=1
Gene Ontology
ID GO:0005524
description magnesium-chelatase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58905: 256127-277337 , PASA_asmbl_58906: 256127-276677 , PASA_asmbl_58907: 274483-274839 , PASA_asmbl_58910: 258285-274918
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_240 0.0 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
2 Hb_001723_030 0.0810148044 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Jatropha curcas]
3 Hb_010984_010 0.088596881 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_014361_110 0.0917883783 - - RNA binding protein, putative [Ricinus communis]
5 Hb_002740_190 0.0969927883 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
6 Hb_002217_140 0.0997036823 - - PREDICTED: 30S ribosomal protein S1, chloroplastic [Nelumbo nucifera]
7 Hb_166127_030 0.1029497805 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_004055_160 0.103732039 - - PREDICTED: glyoxylate/succinic semialdehyde reductase 2, chloroplastic [Jatropha curcas]
9 Hb_000803_220 0.104946921 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
10 Hb_000309_020 0.1119810094 - - PREDICTED: uncharacterized protein LOC105641764 [Jatropha curcas]
11 Hb_009687_020 0.1121016675 - - hypothetical protein JCGZ_10323 [Jatropha curcas]
12 Hb_002027_410 0.1132915871 - - PREDICTED: protease Do-like 2, chloroplastic [Jatropha curcas]
13 Hb_002005_040 0.1145776693 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_016461_030 0.1151159057 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_031139_010 0.121359634 - - PREDICTED: uncharacterized protein LOC105632403 isoform X1 [Jatropha curcas]
16 Hb_003142_010 0.1221360166 transcription factor TF Family: SET PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX5-like [Populus euphratica]
17 Hb_005618_150 0.1227792348 - - PREDICTED: protein translocase subunit SecA, chloroplastic [Jatropha curcas]
18 Hb_018043_020 0.1228979831 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
19 Hb_000345_370 0.1230802257 - - PREDICTED: probable Xaa-Pro aminopeptidase P [Jatropha curcas]
20 Hb_008616_040 0.1234935694 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000803_240 Hb_000803_240 Hb_001723_030 Hb_001723_030 Hb_000803_240--Hb_001723_030 Hb_010984_010 Hb_010984_010 Hb_000803_240--Hb_010984_010 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_001723_030--Hb_002217_140 Hb_000309_020 Hb_000309_020 Hb_001723_030--Hb_000309_020 Hb_016461_030 Hb_016461_030 Hb_001723_030--Hb_016461_030 Hb_002027_410 Hb_002027_410 Hb_001723_030--Hb_002027_410 Hb_000684_430 Hb_000684_430 Hb_001723_030--Hb_000684_430 Hb_000803_220 Hb_000803_220 Hb_010984_010--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_018043_020 Hb_018043_020 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010 Hb_000548_060 Hb_000548_060 Hb_014361_110--Hb_000548_060 Hb_014361_110--Hb_000684_430 Hb_014361_110--Hb_018043_020 Hb_014361_110--Hb_001723_030 Hb_005116_100 Hb_005116_100 Hb_014361_110--Hb_005116_100 Hb_002740_190--Hb_010984_010 Hb_002740_190--Hb_016760_010 Hb_002740_190--Hb_001723_030 Hb_000069_490 Hb_000069_490 Hb_002740_190--Hb_000069_490 Hb_028707_110 Hb_028707_110 Hb_002740_190--Hb_028707_110 Hb_002217_140--Hb_000684_430 Hb_004055_160 Hb_004055_160 Hb_002217_140--Hb_004055_160 Hb_006829_080 Hb_006829_080 Hb_002217_140--Hb_006829_080 Hb_000802_050 Hb_000802_050 Hb_002217_140--Hb_000802_050 Hb_000640_260 Hb_000640_260 Hb_166127_030--Hb_000640_260 Hb_000189_250 Hb_000189_250 Hb_166127_030--Hb_000189_250 Hb_002671_130 Hb_002671_130 Hb_166127_030--Hb_002671_130 Hb_000934_020 Hb_000934_020 Hb_166127_030--Hb_000934_020 Hb_021409_190 Hb_021409_190 Hb_166127_030--Hb_021409_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.56251 5.70336 23.9902 11.795 7.94161 7.68448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.59888 4.32488 3.55699 12.3152 57.0206

CAGE analysis