Hb_000803_260

Information

Type transcription factor
Description TF Family: DDT
Location Contig803: 286098-296242
Sequence    

Annotation

kegg
ID rcu:RCOM_1578820
description hypothetical protein
nr
ID XP_012090058.1
description PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
swissprot
ID Q9W0T1
description Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster GN=E(bx) PE=1 SV=2
trembl
ID A0A067JH50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25964 PE=4 SV=1
Gene Ontology
ID GO:0046872
description dna ion isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58912: 286111-289342 , PASA_asmbl_58913: 289487-291964 , PASA_asmbl_58914: 292044-294776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_260 0.0 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
2 Hb_001329_140 0.0640768544 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
3 Hb_000318_390 0.0749200509 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
4 Hb_001862_180 0.0785635692 - - PREDICTED: pentatricopeptide repeat-containing protein ELI1, chloroplastic [Jatropha curcas]
5 Hb_000684_250 0.078840294 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
6 Hb_001472_090 0.079356829 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1 [Jatropha curcas]
7 Hb_005901_020 0.0818395799 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
8 Hb_014267_010 0.0846734097 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
9 Hb_000201_110 0.085087233 - - hypothetical protein JCGZ_21690 [Jatropha curcas]
10 Hb_003440_050 0.0859968644 - - hypothetical protein JCGZ_05806 [Jatropha curcas]
11 Hb_012799_030 0.0861363234 - - PREDICTED: pentatricopeptide repeat-containing protein At1g55630-like [Jatropha curcas]
12 Hb_000890_050 0.0862816733 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
13 Hb_000007_450 0.0871646748 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
14 Hb_004228_010 0.0876865016 - - PREDICTED: BEACH domain-containing protein lvsA [Jatropha curcas]
15 Hb_001205_230 0.0882255987 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
16 Hb_003203_030 0.0894964408 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
17 Hb_012656_030 0.0898578307 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
18 Hb_004143_130 0.0900604123 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
19 Hb_001199_100 0.092383217 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
20 Hb_009767_080 0.0924511289 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_260 Hb_000803_260 Hb_001329_140 Hb_001329_140 Hb_000803_260--Hb_001329_140 Hb_000318_390 Hb_000318_390 Hb_000803_260--Hb_000318_390 Hb_001862_180 Hb_001862_180 Hb_000803_260--Hb_001862_180 Hb_000684_250 Hb_000684_250 Hb_000803_260--Hb_000684_250 Hb_001472_090 Hb_001472_090 Hb_000803_260--Hb_001472_090 Hb_005901_020 Hb_005901_020 Hb_000803_260--Hb_005901_020 Hb_001329_140--Hb_000684_250 Hb_003168_110 Hb_003168_110 Hb_001329_140--Hb_003168_110 Hb_000037_190 Hb_000037_190 Hb_001329_140--Hb_000037_190 Hb_000457_260 Hb_000457_260 Hb_001329_140--Hb_000457_260 Hb_000590_050 Hb_000590_050 Hb_001329_140--Hb_000590_050 Hb_014267_010 Hb_014267_010 Hb_000318_390--Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_000318_390--Hb_012656_030 Hb_000890_050 Hb_000890_050 Hb_000318_390--Hb_000890_050 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_003440_050 Hb_003440_050 Hb_000318_390--Hb_003440_050 Hb_003203_030 Hb_003203_030 Hb_001862_180--Hb_003203_030 Hb_001862_180--Hb_001205_230 Hb_003910_060 Hb_003910_060 Hb_001862_180--Hb_003910_060 Hb_000388_090 Hb_000388_090 Hb_001862_180--Hb_000388_090 Hb_001862_180--Hb_001329_140 Hb_000684_250--Hb_003168_110 Hb_002235_300 Hb_002235_300 Hb_000684_250--Hb_002235_300 Hb_009767_080 Hb_009767_080 Hb_000684_250--Hb_009767_080 Hb_002253_080 Hb_002253_080 Hb_000684_250--Hb_002253_080 Hb_002267_140 Hb_002267_140 Hb_000684_250--Hb_002267_140 Hb_004228_010 Hb_004228_010 Hb_001472_090--Hb_004228_010 Hb_000574_070 Hb_000574_070 Hb_001472_090--Hb_000574_070 Hb_001472_090--Hb_014267_010 Hb_001472_090--Hb_000684_250 Hb_000540_060 Hb_000540_060 Hb_001472_090--Hb_000540_060 Hb_001199_100 Hb_001199_100 Hb_005901_020--Hb_001199_100 Hb_001496_070 Hb_001496_070 Hb_005901_020--Hb_001496_070 Hb_003253_040 Hb_003253_040 Hb_005901_020--Hb_003253_040 Hb_001449_040 Hb_001449_040 Hb_005901_020--Hb_001449_040 Hb_004032_380 Hb_004032_380 Hb_005901_020--Hb_004032_380 Hb_003294_090 Hb_003294_090 Hb_005901_020--Hb_003294_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7266 13.3756 5.53203 6.82595 11.0554 18.3978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.18691 5.62342 14.4312 10.1327 16.6814

CAGE analysis