Hb_000803_300

Information

Type -
Description -
Location Contig803: 336114-340407
Sequence    

Annotation

kegg
ID rcu:RCOM_1579230
description nuclear movement protein nudc, putative
nr
ID XP_002513546.1
description nuclear movement protein nudc, putative [Ricinus communis]
swissprot
ID Q9LV09
description Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1
trembl
ID B9RIH7
description Nuclear movement protein nudc, putative OS=Ricinus communis GN=RCOM_1579230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58922: 335996-340796 , PASA_asmbl_58923: 335996-336769
cDNA
(Sanger)
(ID:Location)		 025_O09.ab1: 336150-336489 , 053_A20.ab1: 336150-336487

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_300 0.0 - - nuclear movement protein nudc, putative [Ricinus communis]
2 Hb_002097_090 0.0568956652 - - Splicing factor 3A subunit, putative [Ricinus communis]
3 Hb_002400_180 0.0573239484 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000522_090 0.0573874541 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
5 Hb_005245_130 0.0604414985 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
6 Hb_009265_080 0.0626709993 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
7 Hb_000139_250 0.0637863586 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
8 Hb_003581_120 0.0640415275 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
9 Hb_004934_090 0.064712354 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
10 Hb_001014_010 0.0669485229 - - PREDICTED: uncharacterized protein LOC105647311 [Jatropha curcas]
11 Hb_028639_060 0.0671063687 - - transporter, putative [Ricinus communis]
12 Hb_002007_350 0.0671193803 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
13 Hb_007590_080 0.0678255463 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
14 Hb_012305_070 0.0685252889 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000879_140 0.0690850708 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
16 Hb_002030_030 0.0702552181 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
17 Hb_000034_050 0.0710559095 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
18 Hb_005977_090 0.0721764745 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
19 Hb_000645_150 0.0737793134 - - zinc finger protein, putative [Ricinus communis]
20 Hb_026099_010 0.074997737 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_300 Hb_000803_300 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_000684_420 Hb_000684_420 Hb_002097_090--Hb_000684_420 Hb_000645_150 Hb_000645_150 Hb_002097_090--Hb_000645_150 Hb_004934_090 Hb_004934_090 Hb_002097_090--Hb_004934_090 Hb_000076_080 Hb_000076_080 Hb_002097_090--Hb_000076_080 Hb_009620_040 Hb_009620_040 Hb_002097_090--Hb_009620_040 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050 Hb_000522_090--Hb_002097_090 Hb_000522_090--Hb_005245_130 Hb_000522_090--Hb_004934_090 Hb_005977_090 Hb_005977_090 Hb_000522_090--Hb_005977_090 Hb_002030_030 Hb_002030_030 Hb_000522_090--Hb_002030_030 Hb_005245_130--Hb_004934_090 Hb_003406_010 Hb_003406_010 Hb_005245_130--Hb_003406_010 Hb_004096_030 Hb_004096_030 Hb_005245_130--Hb_004096_030 Hb_005276_210 Hb_005276_210 Hb_005245_130--Hb_005276_210 Hb_031939_010 Hb_031939_010 Hb_005245_130--Hb_031939_010 Hb_002007_350 Hb_002007_350 Hb_009265_080--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_009265_080--Hb_008253_010 Hb_009265_080--Hb_004678_060 Hb_009265_080--Hb_002400_180 Hb_004195_280 Hb_004195_280 Hb_009265_080--Hb_004195_280 Hb_002942_220 Hb_002942_220 Hb_000139_250--Hb_002942_220 Hb_023001_020 Hb_023001_020 Hb_000139_250--Hb_023001_020 Hb_000424_010 Hb_000424_010 Hb_000139_250--Hb_000424_010 Hb_012654_010 Hb_012654_010 Hb_000139_250--Hb_012654_010 Hb_144787_030 Hb_144787_030 Hb_000139_250--Hb_144787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
381.557 174.473 101.748 105.419 440.638 422.814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
324.673 190.174 215.887 151.58 108.204

CAGE analysis