Hb_000803_310

Information

Type transcription factor
Description TF Family: Orphans
Location Contig803: 367303-370973
Sequence    

Annotation

kegg
ID rcu:RCOM_1579240
description hypothetical protein
nr
ID XP_012090072.1
description PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
swissprot
ID Q9FHH8
description Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2
trembl
ID A0A067JQ78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58924: 368356-368834 , PASA_asmbl_58926: 369208-370923
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_310 0.0 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
2 Hb_163430_010 0.1552214916 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
3 Hb_005675_060 0.1762883204 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
4 Hb_001481_010 0.1874314749 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
5 Hb_005724_050 0.203738275 - - -
6 Hb_000058_050 0.2039972683 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
7 Hb_000834_050 0.2061120898 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
8 Hb_014497_030 0.2169231275 - - PREDICTED: mitotic spindle checkpoint protein BUBR1 [Jatropha curcas]
9 Hb_001079_030 0.2337375612 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
10 Hb_095471_020 0.2349519603 - - -
11 Hb_000165_110 0.2366024966 - - unknown [Medicago truncatula]
12 Hb_000401_010 0.2392833741 - - SAB, putative [Ricinus communis]
13 Hb_001409_050 0.2399116596 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000165_120 0.2455367806 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
15 Hb_027472_130 0.2458172958 - - Cytochrome P450 [Theobroma cacao]
16 Hb_001776_200 0.2470407964 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
17 Hb_003050_150 0.247711107 - - endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Ricinus communis]
18 Hb_000008_430 0.2503650235 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
19 Hb_086639_100 0.2541592794 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105646787 [Jatropha curcas]
20 Hb_002259_110 0.2545625112 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_310 Hb_000803_310 Hb_163430_010 Hb_163430_010 Hb_000803_310--Hb_163430_010 Hb_005675_060 Hb_005675_060 Hb_000803_310--Hb_005675_060 Hb_001481_010 Hb_001481_010 Hb_000803_310--Hb_001481_010 Hb_005724_050 Hb_005724_050 Hb_000803_310--Hb_005724_050 Hb_000058_050 Hb_000058_050 Hb_000803_310--Hb_000058_050 Hb_000834_050 Hb_000834_050 Hb_000803_310--Hb_000834_050 Hb_163430_010--Hb_001481_010 Hb_163430_010--Hb_000058_050 Hb_163430_010--Hb_005724_050 Hb_001196_080 Hb_001196_080 Hb_163430_010--Hb_001196_080 Hb_014497_030 Hb_014497_030 Hb_163430_010--Hb_014497_030 Hb_004945_020 Hb_004945_020 Hb_005675_060--Hb_004945_020 Hb_001907_130 Hb_001907_130 Hb_005675_060--Hb_001907_130 Hb_027472_130 Hb_027472_130 Hb_005675_060--Hb_027472_130 Hb_000401_010 Hb_000401_010 Hb_005675_060--Hb_000401_010 Hb_131864_030 Hb_131864_030 Hb_005675_060--Hb_131864_030 Hb_001079_030 Hb_001079_030 Hb_001481_010--Hb_001079_030 Hb_006694_030 Hb_006694_030 Hb_001481_010--Hb_006694_030 Hb_001481_010--Hb_000058_050 Hb_001409_050 Hb_001409_050 Hb_001481_010--Hb_001409_050 Hb_001481_010--Hb_000834_050 Hb_000008_430 Hb_000008_430 Hb_005724_050--Hb_000008_430 Hb_005724_050--Hb_001409_050 Hb_000732_230 Hb_000732_230 Hb_005724_050--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_005724_050--Hb_001205_180 Hb_001951_240 Hb_001951_240 Hb_005724_050--Hb_001951_240 Hb_002609_190 Hb_002609_190 Hb_005724_050--Hb_002609_190 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_000058_050--Hb_001196_080 Hb_000748_110 Hb_000748_110 Hb_000834_050--Hb_000748_110 Hb_025905_010 Hb_025905_010 Hb_000834_050--Hb_025905_010 Hb_001408_020 Hb_001408_020 Hb_000834_050--Hb_001408_020 Hb_005214_070 Hb_005214_070 Hb_000834_050--Hb_005214_070 Hb_003849_120 Hb_003849_120 Hb_000834_050--Hb_003849_120 Hb_007290_070 Hb_007290_070 Hb_000834_050--Hb_007290_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.411318 9.19408 15.6477 5.9254 8.22841 3.0942
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0591142 0.0551587 7.80561 2.76218

CAGE analysis