Hb_000803_320

Information

Type transcription factor
Description TF Family: PHD
Location Contig803: 373512-382050
Sequence    

Annotation

kegg
ID tcc:TCM_015395
description SET domain protein 16 isoform 1
nr
ID XP_012090074.1
description PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
swissprot
ID Q9SUE7
description Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3
trembl
ID A0A067JE56
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_25977 PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase atx4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58927: 373426-373674 , PASA_asmbl_58928: 374400-377606 , PASA_asmbl_58929: 378743-380426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_320 0.0 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
2 Hb_002874_110 0.0575524159 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
3 Hb_000270_390 0.0663454329 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
4 Hb_009288_020 0.0757696089 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
5 Hb_000504_180 0.0814095141 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
6 Hb_009178_060 0.0821237731 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_006663_060 0.0837656398 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
8 Hb_009296_080 0.0838717204 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
9 Hb_003517_070 0.0855946302 - - PREDICTED: protein transport protein Sec24-like At3g07100 [Jatropha curcas]
10 Hb_027445_020 0.0871462571 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
11 Hb_006210_010 0.0882083622 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
12 Hb_001627_040 0.0885601578 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 isoform X1 [Jatropha curcas]
13 Hb_003040_050 0.08858239 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
14 Hb_002025_030 0.0889333437 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
15 Hb_138585_080 0.0891480708 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
16 Hb_001975_150 0.09049559 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
17 Hb_004957_030 0.0906466795 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
18 Hb_000890_070 0.0921550474 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
19 Hb_004218_180 0.0922595484 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
20 Hb_028487_160 0.0923402807 - - clathrin assembly protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000803_320 Hb_000803_320 Hb_002874_110 Hb_002874_110 Hb_000803_320--Hb_002874_110 Hb_000270_390 Hb_000270_390 Hb_000803_320--Hb_000270_390 Hb_009288_020 Hb_009288_020 Hb_000803_320--Hb_009288_020 Hb_000504_180 Hb_000504_180 Hb_000803_320--Hb_000504_180 Hb_009178_060 Hb_009178_060 Hb_000803_320--Hb_009178_060 Hb_006663_060 Hb_006663_060 Hb_000803_320--Hb_006663_060 Hb_002749_060 Hb_002749_060 Hb_002874_110--Hb_002749_060 Hb_073171_070 Hb_073171_070 Hb_002874_110--Hb_073171_070 Hb_002874_110--Hb_006663_060 Hb_011819_020 Hb_011819_020 Hb_002874_110--Hb_011819_020 Hb_002874_110--Hb_009288_020 Hb_002768_060 Hb_002768_060 Hb_000270_390--Hb_002768_060 Hb_003544_160 Hb_003544_160 Hb_000270_390--Hb_003544_160 Hb_000270_390--Hb_002874_110 Hb_000789_200 Hb_000789_200 Hb_000270_390--Hb_000789_200 Hb_004317_060 Hb_004317_060 Hb_000270_390--Hb_004317_060 Hb_003040_050 Hb_003040_050 Hb_009288_020--Hb_003040_050 Hb_009288_020--Hb_006663_060 Hb_009288_020--Hb_073171_070 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_011174_020 Hb_011174_020 Hb_009288_020--Hb_011174_020 Hb_001716_040 Hb_001716_040 Hb_000504_180--Hb_001716_040 Hb_001975_150 Hb_001975_150 Hb_000504_180--Hb_001975_150 Hb_158530_020 Hb_158530_020 Hb_000504_180--Hb_158530_020 Hb_001951_220 Hb_001951_220 Hb_000504_180--Hb_001951_220 Hb_009296_080 Hb_009296_080 Hb_000504_180--Hb_009296_080 Hb_005582_040 Hb_005582_040 Hb_000504_180--Hb_005582_040 Hb_005511_150 Hb_005511_150 Hb_009178_060--Hb_005511_150 Hb_002232_390 Hb_002232_390 Hb_009178_060--Hb_002232_390 Hb_005914_040 Hb_005914_040 Hb_009178_060--Hb_005914_040 Hb_011364_020 Hb_011364_020 Hb_009178_060--Hb_011364_020 Hb_005250_010 Hb_005250_010 Hb_009178_060--Hb_005250_010 Hb_006663_060--Hb_073171_070 Hb_006663_060--Hb_003040_050 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09049 3.10357 1.98286 4.31733 1.82685 2.0172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80469 1.85953 1.80109 3.31296 5.6126

CAGE analysis